Dynamic integration of splicing within gene regulatory pathways
U Braunschweig, S Gueroussov, AM Plocik… - Cell, 2013 - cell.com
Precursor mRNA splicing is one of the most highly regulated processes in metazoan
species. In addition to generating vast repertoires of RNAs and proteins, splicing has a …
species. In addition to generating vast repertoires of RNAs and proteins, splicing has a …
Exporting RNA from the nucleus to the cytoplasm
A Köhler, E Hurt - Nature reviews Molecular cell biology, 2007 - nature.com
The transport of RNA molecules from the nucleus to the cytoplasm is fundamental for gene
expression. The different RNA species that are produced in the nucleus are exported …
expression. The different RNA species that are produced in the nucleus are exported …
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
Set1, the yeast histone H3-lysine 4 (H3-K4) methylase, is recruited by the Pol II elongation
machinery to a highly localized domain at the 5′ portion of active mRNA coding regions …
machinery to a highly localized domain at the 5′ portion of active mRNA coding regions …
TREX is a conserved complex coupling transcription with messenger RNA export
K Sträßer, S Masuda, P Mason, J Pfannstiel, M Oppizzi… - Nature, 2002 - nature.com
The essential yeast proteins Yra1 and Sub2 are messenger RNA export factors that have
conserved counterparts in metazoans, designated Aly and UAP56, respectively,,,,,,. These …
conserved counterparts in metazoans, designated Aly and UAP56, respectively,,,,,,. These …
An extensive network of coupling among gene expression machines
T Maniatis, R Reed - Nature, 2002 - nature.com
Gene expression in eukaryotes requires several multi-component cellular machines. Each
machine carries out a separate step in the gene expression pathway, which includes …
machine carries out a separate step in the gene expression pathway, which includes …
Chromatin immunoprecipitation and microarray-based analysis of protein location
TI Lee, SE Johnstone, RA Young - Nature protocols, 2006 - nature.com
Genome-wide location analysis, also known as ChIP-Chip, combines chromatin
immunoprecipitation and DNA microarray analysis to identify protein-DNA interactions that …
immunoprecipitation and DNA microarray analysis to identify protein-DNA interactions that …
Recruitment of the human TREX complex to mRNA during splicing
S Masuda, R Das, H Cheng, E Hurt… - Genes & …, 2005 - genesdev.cshlp.org
In yeast, the TREX complex contains the THO transcription elongation complex, which
functions in direct cotranscriptional recruitment of the mRNA export proteins Sub2 and Yra1 …
functions in direct cotranscriptional recruitment of the mRNA export proteins Sub2 and Yra1 …
Nuclear mRNPs are compact particles packaged with a network of proteins promoting RNA–RNA interactions
F Bonneau, J Basquin, B Steigenberger… - Genes & …, 2023 - genesdev.cshlp.org
Messenger RNAs (mRNAs) are at the center of the central dogma of molecular biology. In
eukaryotic cells, these long ribonucleic acid polymers do not exist as naked transcripts; …
eukaryotic cells, these long ribonucleic acid polymers do not exist as naked transcripts; …
Nucleocytoplasmic transport: taking an inventory
H Fried, U Kutay - Cellular and Molecular Life Sciences CMLS, 2003 - Springer
In eukaryotic cells, the enclosure of the genetic information in the nucleus allows the spatial
and temporal separation of DNA replication and transcription from cytoplasmic protein …
and temporal separation of DNA replication and transcription from cytoplasmic protein …
“Cotranscriptionality”: the transcription elongation complex as a nexus for nuclear transactions
Much of the complex process of RNP biogenesis takes place at the gene cotranscriptionally.
The target for RNA binding and processing factors is, therefore, not a solitary RNA molecule …
The target for RNA binding and processing factors is, therefore, not a solitary RNA molecule …