Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Mycobiome diversity: high-throughput sequencing and identification of fungi
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses
AE Pérez-Cobas, L Gomez-Valero… - Microbial …, 2020 - microbiologyresearch.org
Metagenomics and marker gene approaches, coupled with high-throughput sequencing
technologies, have revolutionized the field of microbial ecology. Metagenomics is a culture …
technologies, have revolutionized the field of microbial ecology. Metagenomics is a culture …
Commensal fungi in health and disease
JJ Limon, JH Skalski, DM Underhill - Cell host & microbe, 2017 - cell.com
Fungi are increasingly being recognized as common members of the microbiomes found on
nearly all mucosal surfaces, and interest is growing in understanding how these organisms …
nearly all mucosal surfaces, and interest is growing in understanding how these organisms …
Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline
Fungal communities associated with plants and soil influence plant fitness and ecosystem
functioning. They are frequently studied by metabarcoding approaches targeting the …
functioning. They are frequently studied by metabarcoding approaches targeting the …
Crossing kingdoms: how the mycobiota and fungal-bacterial interactions impact host health and disease
The term “microbiota” invokes images of mucosal surfaces densely populated with bacteria.
These surfaces and the luminal compartments they form indeed predominantly harbor …
These surfaces and the luminal compartments they form indeed predominantly harbor …
First insights into the diverse human archaeome: specific detection of archaea in the gastrointestinal tract, lung, and nose and on skin
Human-associated archaea remain understudied in the field of microbiome research,
although in particular methanogenic archaea were found to be regular commensals of the …
although in particular methanogenic archaea were found to be regular commensals of the …
Mycobiome in the gut: a multiperspective review
Human gut is home to a diverse and complex microbial ecosystem encompassing bacteria,
viruses, parasites, fungi, and other microorganisms that have an undisputable role in …
viruses, parasites, fungi, and other microorganisms that have an undisputable role in …
[HTML][HTML] What is new and relevant for sequencing-based microbiome research? A mini-review
Microbiome research has transformed the scientific landscape, as reflected by the
exponential increase in microbiome-related publications from many different disciplines …
exponential increase in microbiome-related publications from many different disciplines …
The impact of DNA extraction methods on stool bacterial and fungal microbiota community recovery
K Fiedorová, M Radvanský, E Němcová… - Frontiers in …, 2019 - frontiersin.org
Our understanding of human gut microbiota in health and disease depends on accurate and
reproducible microbial data acquisition. The critical step in this process is to apply an …
reproducible microbial data acquisition. The critical step in this process is to apply an …