Transcription dynamics in living cells

TL Lenstra, J Rodriguez, H Chen… - Annual review of …, 2016 - annualreviews.org
The transcription cycle can be roughly divided into three stages: initiation, elongation, and
termination. Understanding the molecular events that regulate all these stages requires a …

Controlling nuclear RNA levels

M Schmid, TH Jensen - Nature Reviews Genetics, 2018 - nature.com
RNA turnover is an integral part of cellular RNA homeostasis and gene expression
regulation. Whereas the cytoplasmic control of protein-coding mRNA is often the focus of …

Alternative polyadenylation by sequential activation of distal and proximal PolyA sites

P Tang, Y Yang, G Li, L Huang, M Wen… - Nature structural & …, 2022 - nature.com
Analogous to alternative splicing, alternative polyadenylation (APA) has long been thought
to occur independently at proximal and distal polyA sites. Using fractionation-seq, we …

A Cdk9–PP1 switch regulates the elongation–termination transition of RNA polymerase II

PK Parua, GT Booth, M Sansó, B Benjamin, JC Tanny… - Nature, 2018 - nature.com
The end of the RNA polymerase II (Pol II) transcription cycle is strictly regulated to prevent
interference between neighbouring genes and to safeguard transcriptome integrity. The …

Xrn2 accelerates termination by RNA polymerase II, which is underpinned by CPSF73 activity

JD Eaton, L Davidson, DLV Bauer… - Genes & …, 2018 - genesdev.cshlp.org
Termination is a ubiquitous phase in every transcription cycle but is incompletely understood
and a subject of debate. We used gene editing as a new approach to address its mechanism …

Selective roles of vertebrate PCF11 in premature and full-length transcript termination

K Kamieniarz-Gdula, MR Gdula, K Panser, T Nojima… - Molecular cell, 2019 - cell.com
The pervasive nature of RNA polymerase II (Pol II) transcription requires efficient
termination. A key player in this process is the cleavage and polyadenylation (CPA) factor …

Pause & go: from the discovery of RNA polymerase pausing to its functional implications

A Mayer, HM Landry, LS Churchman - Current opinion in cell biology, 2017 - Elsevier
The synthesis of nascent RNA is a discontinuous process in which phases of productive
elongation by RNA polymerase are interrupted by frequent pauses. Transcriptional pausing …

Human TFIIH kinase CDK7 regulates transcription-associated chromatin modifications

CC Ebmeier, B Erickson, BL Allen, MA Allen, H Kim… - Cell reports, 2017 - cell.com
CDK7 phosphorylates the RNA polymerase II (pol II) C-terminal domain CTD and activates
the P-TEFb-associated kinase CDK9, but its regulatory roles remain obscure. Here, using …

High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription

A Bressin, O Jasnovidova, M Arnold… - Nature …, 2023 - nature.com
Gene transcription by RNA polymerase II (Pol II) is under control of promoters and distal
regulatory elements known as enhancers. Enhancers are themselves transcribed by Pol II …

Paf1C regulates RNA polymerase II progression by modulating elongation rate

L Hou, Y Wang, Y Liu, N Zhang… - Proceedings of the …, 2019 - National Acad Sciences
Elongation factor Paf1C regulates several stages of the RNA polymerase II (Pol II)
transcription cycle, although it is unclear how it modulates Pol II distribution and progression …