Transcription dynamics in living cells
The transcription cycle can be roughly divided into three stages: initiation, elongation, and
termination. Understanding the molecular events that regulate all these stages requires a …
termination. Understanding the molecular events that regulate all these stages requires a …
Controlling nuclear RNA levels
M Schmid, TH Jensen - Nature Reviews Genetics, 2018 - nature.com
RNA turnover is an integral part of cellular RNA homeostasis and gene expression
regulation. Whereas the cytoplasmic control of protein-coding mRNA is often the focus of …
regulation. Whereas the cytoplasmic control of protein-coding mRNA is often the focus of …
Alternative polyadenylation by sequential activation of distal and proximal PolyA sites
P Tang, Y Yang, G Li, L Huang, M Wen… - Nature structural & …, 2022 - nature.com
Analogous to alternative splicing, alternative polyadenylation (APA) has long been thought
to occur independently at proximal and distal polyA sites. Using fractionation-seq, we …
to occur independently at proximal and distal polyA sites. Using fractionation-seq, we …
A Cdk9–PP1 switch regulates the elongation–termination transition of RNA polymerase II
The end of the RNA polymerase II (Pol II) transcription cycle is strictly regulated to prevent
interference between neighbouring genes and to safeguard transcriptome integrity. The …
interference between neighbouring genes and to safeguard transcriptome integrity. The …
Xrn2 accelerates termination by RNA polymerase II, which is underpinned by CPSF73 activity
JD Eaton, L Davidson, DLV Bauer… - Genes & …, 2018 - genesdev.cshlp.org
Termination is a ubiquitous phase in every transcription cycle but is incompletely understood
and a subject of debate. We used gene editing as a new approach to address its mechanism …
and a subject of debate. We used gene editing as a new approach to address its mechanism …
Selective roles of vertebrate PCF11 in premature and full-length transcript termination
K Kamieniarz-Gdula, MR Gdula, K Panser, T Nojima… - Molecular cell, 2019 - cell.com
The pervasive nature of RNA polymerase II (Pol II) transcription requires efficient
termination. A key player in this process is the cleavage and polyadenylation (CPA) factor …
termination. A key player in this process is the cleavage and polyadenylation (CPA) factor …
Pause & go: from the discovery of RNA polymerase pausing to its functional implications
A Mayer, HM Landry, LS Churchman - Current opinion in cell biology, 2017 - Elsevier
The synthesis of nascent RNA is a discontinuous process in which phases of productive
elongation by RNA polymerase are interrupted by frequent pauses. Transcriptional pausing …
elongation by RNA polymerase are interrupted by frequent pauses. Transcriptional pausing …
Human TFIIH kinase CDK7 regulates transcription-associated chromatin modifications
CDK7 phosphorylates the RNA polymerase II (pol II) C-terminal domain CTD and activates
the P-TEFb-associated kinase CDK9, but its regulatory roles remain obscure. Here, using …
the P-TEFb-associated kinase CDK9, but its regulatory roles remain obscure. Here, using …
High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription
A Bressin, O Jasnovidova, M Arnold… - Nature …, 2023 - nature.com
Gene transcription by RNA polymerase II (Pol II) is under control of promoters and distal
regulatory elements known as enhancers. Enhancers are themselves transcribed by Pol II …
regulatory elements known as enhancers. Enhancers are themselves transcribed by Pol II …
Paf1C regulates RNA polymerase II progression by modulating elongation rate
Elongation factor Paf1C regulates several stages of the RNA polymerase II (Pol II)
transcription cycle, although it is unclear how it modulates Pol II distribution and progression …
transcription cycle, although it is unclear how it modulates Pol II distribution and progression …