Plant terminators: the unsung heroes of gene expression

FF De Felippes, PM Waterhouse - Journal of Experimental …, 2023 - academic.oup.com
To be properly expressed, genes need to be accompanied by a terminator, a region
downstream of the coding sequence that contains the information necessary for the …

[HTML][HTML] Tyrosine-1 of RNA polymerase II CTD controls global termination of gene transcription in mammals

N Shah, MA Maqbool, Y Yahia, AZ El Aabidine… - Molecular cell, 2018 - cell.com
The carboxy-terminal domain (CTD) of RNA polymerase (Pol) II is composed of a repetition
of YSPTSPS heptads and functions as a loading platform for protein complexes that regulate …

[HTML][HTML] Distinct Cdk9-phosphatase switches act at the beginning and end of elongation by RNA polymerase II

PK Parua, S Kalan, B Benjamin, M Sansó… - Nature …, 2020 - nature.com
Reversible phosphorylation of Pol II and accessory factors helps order the transcription
cycle. Here, we define two kinase-phosphatase switches that operate at different points in …

[HTML][HTML] SCAF4 and SCAF8, mRNA anti-terminator proteins

LH Gregersen, R Mitter, AP Ugalde, T Nojima… - Cell, 2019 - cell.com
Accurate regulation of mRNA termination is required for correct gene expression. Here, we
describe a role for SCAF4 and SCAF8 as anti-terminators, suppressing the use of early …

Knockout of protein phosphatase 1 in Leishmania major reveals its role during RNA polymerase II transcription termination

R Kieft, Y Zhang, H Yan, RJ Schmitz… - Nucleic Acids …, 2023 - academic.oup.com
The genomes of kinetoplastids are organized into polycistronic transcription units that are
flanked by a modified DNA base (base J, beta-D-glucosyl-hydroxymethyluracil). Previous …

BRD4: a general regulator of transcription elongation

E Altendorfer, Y Mochalova, A Mayer - Transcription, 2022 - Taylor & Francis
Transcription elongation by RNA polymerase II (Pol II) has emerged as a regulatory hub in
gene expression. A key control point occurs during early transcription elongation when Pol II …

Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast

GT Booth, IX Wang, VG Cheung, JT Lis - Genome research, 2016 - genome.cshlp.org
Complex regulation of gene expression in mammals has evolved from simpler eukaryotic
systems, yet the mechanistic features of this evolution remain elusive. Here, we compared …

[HTML][HTML] ZC3H4 restricts non-coding transcription in human cells

C Estell, L Davidson, PC Steketee, A Monier, S West - Elife, 2021 - elifesciences.org
The human genome encodes thousands of non-coding RNAs. Many of these terminate early
and are then rapidly degraded, but how their transcription is restricted is poorly understood …

U1 snRNP telescripting: suppression of premature transcription termination in introns as a new layer of gene regulation

CC Venters, JM Oh, C Di, BR So… - Cold Spring Harbor …, 2019 - cshperspectives.cshlp.org
Recent observations showed that nascent RNA polymerase II transcripts, pre-mRNAs, and
noncoding RNAs are highly susceptible to premature 3′-end cleavage and …

Auxin-inducible degron system: an efficient protein degradation tool to study protein function

K Phanindhar, RK Mishra - Biotechniques, 2023 - Taylor & Francis
Targeted protein degradation, with its rapid protein depletion kinetics, allows the
measurement of acute changes in the cell. The auxin-inducible degron (AID) system, rapidly …