[HTML][HTML] Integrative modelling of biomolecular complexes

PI Koukos, A Bonvin - Journal of molecular biology, 2020 - Elsevier
In recent years, the use of integrative, information-driven computational approaches for
modeling the structure of biomolecules has been increasing in popularity. These are now …

High-throughput mutagenesis using a two-fragment PCR approach

FM Heydenreich, T Miljuš, R Jaussi, R Benoit, D Milić… - Scientific reports, 2017 - nature.com
Site-directed scanning mutagenesis is a powerful protein engineering technique which
allows studies of protein functionality at single amino acid resolution and design of stabilized …

Facilitating structure-function studies of CFTR modulator sites with efficiencies in mutagenesis and functional screening

SV Molinski, S Ahmadi, M Hung… - Journal of biomolecular …, 2015 - journals.sagepub.com
There are nearly 2000 mutations in the CFTR gene associated with cystic fibrosis disease,
and to date, the only approved drug, Kalydeco, has been effective in rescuing the functional …

Hypoxic response patterns in lung tissue: An integrated analysis of comparative physiological and transcriptomic studies from Neodon fuscus and Lasiopodomys …

X Li, M Li, M Huang, J Li, S Huang, B Wang… - Science of The Total …, 2023 - Elsevier
Oxygen (O 2) is essential for the survival and reproduction of most species. However, in
recent years, with global climate change and the increasing impact of human activities on …

[HTML][HTML] GigaAssay–An adaptable high-throughput saturation mutagenesis assay platform

R Benjamin, CJ Giacoletto, ZT FitzHugh, D Eames… - Genomics, 2022 - Elsevier
High-throughput assay systems have had a large impact on understanding the mechanisms
of basic cell functions. However, high-throughput assays that directly assess molecular …

Variomics screen identifies the re-entrant loop of the calcium-activated chloride channel ANO1 that facilitates channel activation

A Bill, MO Popa, MT Van Diepen, A Gutierrez… - Journal of Biological …, 2015 - ASBMB
The calcium-activated chloride channel ANO1 regulates multiple physiological processes.
However, little is known about the mechanism of channel gating and regulation of ANO1 …

The 3D structure of human DP prostaglandin G-protein-coupled receptor bound to Cyclopentanoindole antagonist, predicted using the DuplexBiHelix modification of …

V Shankar, WA Goddard III, SK Kim… - Journal of Chemical …, 2017 - ACS Publications
Prostaglandins play a critical physiological role in both cardiovascular and immune systems,
acting through their interactions with 9 prostanoid G protein-coupled receptors (GPCRs) …

High throughput random mutagenesis and single molecule real time sequencing of the muscle nicotinic acetylcholine receptor

PJ Groot-Kormelink, S Ferrand, N Kelley, A Bill… - PLoS …, 2016 - journals.plos.org
High throughput random mutagenesis is a powerful tool to identify which residues are
important for the function of a protein, and gain insight into its structure-function relation. The …

OverFlap PCR: A reliable approach for generating plasmid DNA libraries containing random sequences without a template bias

A Linars, I Silamikelis, D Gudra, A Roga, D Fridmanis - Plos one, 2022 - journals.plos.org
Over the decades, practical biotechnology researchers have aimed to improve naturally
occurring proteins and create novel ones. It is widely recognized that coupling protein …

Exploring large-scale protein function using systematic mutant analysis

AA Padhy, S Sahoo, K Shivani, V Kumari… - Advances in Protein …, 2022 - Elsevier
Intrinsically disordered protein IDPs do not adopt stable three-dimensional structures but
exist as highly dynamic ensembles of conformations. Amyloid-β is an IDP that is at the center …