Fortune telling: metabolic markers of plant performance

O Fernandez, M Urrutia, S Bernillon, C Giauffret… - Metabolomics, 2016 - Springer
Background In the last decade, metabolomics has emerged as a powerful diagnostic and
predictive tool in many branches of science. Researchers in microbes, animal, food, medical …

High-throughput phenotyping and QTL mapping reveals the genetic architecture of maize plant growth

X Zhang, C Huang, D Wu, F Qiao, W Li, L Duan… - Plant …, 2017 - academic.oup.com
With increasing demand for novel traits in crop breeding, the plant research community
faces the challenge of quantitatively analyzing the structure and function of large numbers of …

Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

M Dell'Acqua, DM Gatti, G Pea, F Cattonaro… - Genome biology, 2015 - Springer
Abstract Background Maize (Zea mays) is a globally produced crop with broad genetic and
phenotypic variation. New tools that improve our understanding of the genetic basis of …

Genetic variation of growth dynamics in maize (Zea mays L.) revealed through automated non‐invasive phenotyping

MM Muraya, J Chu, Y Zhao, A Junker… - The Plant …, 2017 - Wiley Online Library
Hitherto, most quantitative trait loci of maize growth and biomass yield have been identified
for a single time point, usually the final harvest stage. Through this approach cumulative …

Integrated phenotyping of root and shoot growth dynamics in maize reveals specific interaction patterns in inbreds and hybrids and in response to drought

R Shi, C Seiler, D Knoch, A Junker… - Frontiers in Plant …, 2023 - frontiersin.org
In recent years, various automated methods for plant phenotyping addressing roots or
shoots have been developed and corresponding platforms have been established to meet …

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

SD Nicolas, JP Péros, T Lacombe, A Launay… - BMC plant biology, 2016 - Springer
Background As for many crops, new high-quality grapevine varieties requiring less pesticide
and adapted to climate change are needed. In perennial species, breeding is a long process …

Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis

M Urrutia, M Blein‐Nicolas, S Prigent… - Plant, cell & …, 2021 - Wiley Online Library
Abstract In Northern Europe, sowing maize one‐month earlier than current agricultural
practices may lead to moderate chilling damage. However, studies of the metabolic …

Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

SS Negro, EJ Millet, D Madur, C Bauland, V Combes… - BMC plant biology, 2019 - Springer
Abstract Background Single Nucleotide Polymorphism (SNP) array and re-sequencing
technologies have different properties (eg calling rate, minor allele frequency profile) and …

Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts

JT Brandenburg, T Mary-Huard, G Rigaill… - PLoS …, 2017 - journals.plos.org
Through the local selection of landraces, humans have guided the adaptation of crops to a
vast range of climatic and ecological conditions. This is particularly true of maize, which was …

Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations

R Rincent, A Charcosset, L Moreau - Theoretical and Applied Genetics, 2017 - Springer
Key message We propose a criterion to predict genomic selection efficiency for structured
populations. This criterion is useful to define optimal calibration set and to estimate …