Machine learning approaches and databases for prediction of drug–target interaction: a survey paper

M Bagherian, E Sabeti, K Wang… - Briefings in …, 2021 - academic.oup.com
The task of predicting the interactions between drugs and targets plays a key role in the
process of drug discovery. There is a need to develop novel and efficient prediction …

[HTML][HTML] Application of machine learning in microbiology

K Qu, F Guo, X Liu, Y Lin, Q Zou - Frontiers in microbiology, 2019 - frontiersin.org
Microorganisms are ubiquitous and closely related to people's daily lives. Since they were
first discovered in the 19th century, researchers have shown great interest in …

MRMD2. 0: a python tool for machine learning with feature ranking and reduction

S He, F Guo, Q Zou - Current Bioinformatics, 2020 - ingentaconnect.com
Aims: The study aims to find a way to reduce the dimensionality of the dataset. Background:
Dimensionality reduction is the key issue of the machine learning process. It does not only …

Identification of drug–target interactions via dual laplacian regularized least squares with multiple kernel fusion

Y Ding, J Tang, F Guo - Knowledge-Based Systems, 2020 - Elsevier
Abstract Detection of Drug–Target Interactions (DTIs) is the time-consuming and laborious
experiment via biochemical approaches. Machine learning based methods have been …

Deep-Resp-Forest: a deep forest model to predict anti-cancer drug response

R Su, X Liu, L Wei, Q Zou - Methods, 2019 - Elsevier
The identification of therapeutic biomarkers predictive of drug response is crucial in
personalized medicine. A number of computational models to predict response of anti …

Identification of drug-side effect association via multiple information integration with centered kernel alignment

Y Ding, J Tang, F Guo - Neurocomputing, 2019 - Elsevier
In medicine research, drug discovery aims to develop a drug to patients who will benefit from
it and try to avoid some side effects. However, the tradition experiment is time consuming …

sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks

M Niu, Y Lin, Q Zou - Plant molecular biology, 2021 - Springer
Key message We proposed an ensemble convolutional neural network model to identify
sgRNA high on-target activity in four crops and we used one-hot encoding and k-mers for …

[HTML][HTML] Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure

H Shi, S Liu, J Chen, X Li, Q Ma, B Yu - Genomics, 2019 - Elsevier
The identification of drug-target interactions has great significance for pharmaceutical
scientific research. Since traditional experimental methods identifying drug-target …

DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features

Y Chu, AC Kaushik, X Wang, W Wang… - Briefings in …, 2021 - academic.oup.com
Drug–target interactions (DTIs) play a crucial role in target-based drug discovery and
development. Computational prediction of DTIs can effectively complement experimental …

Identification of drug–target interactions via multiple kernel-based triple collaborative matrix factorization

Y Ding, J Tang, F Guo, Q Zou - Briefings in Bioinformatics, 2022 - academic.oup.com
Targeted drugs have been applied to the treatment of cancer on a large scale, and some
patients have certain therapeutic effects. It is a time-consuming task to detect drug–target …