Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance
J Guglielmini, P Bourhy, O Schiettekatte… - PLoS neglected …, 2019 - journals.plos.org
Leptospira is a highly heterogeneous bacterial genus that can be divided into three
evolutionary lineages and> 300 serovars. The causative agents of leptospirosis are …
evolutionary lineages and> 300 serovars. The causative agents of leptospirosis are …
Accurate reconstruction of bacterial pan-and core genomes with PEPPAN
Bacterial genomes can contain traces of a complex evolutionary history, including extensive
homologous recombination, gene loss, gene duplications, and horizontal gene transfer. To …
homologous recombination, gene loss, gene duplications, and horizontal gene transfer. To …
Pan-genome storage and analysis techniques
Computational pan-genome analysis has emerged from the rapid increase of available
genome sequencing data. Starting from a microbial pan-genome, the concept has spread to …
genome sequencing data. Starting from a microbial pan-genome, the concept has spread to …
Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors
SG Dashper, HL Mitchell, CA Seers… - Frontiers in …, 2017 - frontiersin.org
Porphyromonas gingivalis is a keystone pathogen of chronic periodontitis. The virulence of
P. gingivalis is reported to be strain related and there are currently a number of strain typing …
P. gingivalis is reported to be strain related and there are currently a number of strain typing …
Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae
J Guglielmini, M Hennart, E Badell… - Journal of Clinical …, 2021 - Am Soc Microbiol
Corynebacterium diphtheriae is highly transmissible and can cause large diphtheria
outbreaks where vaccination coverage is insufficient. Sporadic cases or small clusters are …
outbreaks where vaccination coverage is insufficient. Sporadic cases or small clusters are …
[图书][B] Computational prediction of protein complexes from protein interaction networks
Complexes of physically interacting proteins constitute fundamental functional units that
drive almost all biological processes within cells. A faithful reconstruction of the entire set of …
drive almost all biological processes within cells. A faithful reconstruction of the entire set of …
GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria
Background Development of drug resistance in bacteria causes antibiotic therapies to be
less effective and more costly. Moreover, our understanding of the process remains …
less effective and more costly. Moreover, our understanding of the process remains …
Bacterial pan-genomics
A Iranzadeh, NJ Mulder - Microbial Genomics in Sustainable …, 2019 - Springer
Due to their tendency to have a high recombination rate, bacterial genomes are highly
diverse across different strains. This diversity may even be in the form of the presence or …
diverse across different strains. This diversity may even be in the form of the presence or …
High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug …
A Jamet, J Guglielmini, B Brancotte… - Journal of Clinical …, 2021 - Am Soc Microbiol
Staphylococcus epidermidis is a pathogen emerging worldwide as a leading cause of health
care-associated infections. A standardized high-resolution typing method to document …
care-associated infections. A standardized high-resolution typing method to document …
A pan-genome wide association study to identify genes associated with invasive Streptococcus pneumoniae
A Iranzadeh - 2023 - open.uct.ac.za
Streptococcus pneumoniae (pneumococcus) is one of the leading causes of mortality in
Africa. It asymptomatically colonizes the human nasopharynx. The invasive pneumococcal …
Africa. It asymptomatically colonizes the human nasopharynx. The invasive pneumococcal …