Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance

J Guglielmini, P Bourhy, O Schiettekatte… - PLoS neglected …, 2019 - journals.plos.org
Leptospira is a highly heterogeneous bacterial genus that can be divided into three
evolutionary lineages and> 300 serovars. The causative agents of leptospirosis are …

Accurate reconstruction of bacterial pan-and core genomes with PEPPAN

Z Zhou, J Charlesworth, M Achtman - Genome research, 2020 - genome.cshlp.org
Bacterial genomes can contain traces of a complex evolutionary history, including extensive
homologous recombination, gene loss, gene duplications, and horizontal gene transfer. To …

Pan-genome storage and analysis techniques

T Zekic, G Holley, J Stoye - Comparative Genomics: Methods and …, 2018 - Springer
Computational pan-genome analysis has emerged from the rapid increase of available
genome sequencing data. Starting from a microbial pan-genome, the concept has spread to …

Porphyromonas gingivalis Uses Specific Domain Rearrangements and Allelic Exchange to Generate Diversity in Surface Virulence Factors

SG Dashper, HL Mitchell, CA Seers… - Frontiers in …, 2017 - frontiersin.org
Porphyromonas gingivalis is a keystone pathogen of chronic periodontitis. The virulence of
P. gingivalis is reported to be strain related and there are currently a number of strain typing …

Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae

J Guglielmini, M Hennart, E Badell… - Journal of Clinical …, 2021 - Am Soc Microbiol
Corynebacterium diphtheriae is highly transmissible and can cause large diphtheria
outbreaks where vaccination coverage is insufficient. Sporadic cases or small clusters are …

[图书][B] Computational prediction of protein complexes from protein interaction networks

S Srihari, CH Yong, L Wong - 2017 - books.google.com
Complexes of physically interacting proteins constitute fundamental functional units that
drive almost all biological processes within cells. A faithful reconstruction of the entire set of …

GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria

M Wozniak, J Tiuryn, L Wong - BMC genomics, 2014 - Springer
Background Development of drug resistance in bacteria causes antibiotic therapies to be
less effective and more costly. Moreover, our understanding of the process remains …

Bacterial pan-genomics

A Iranzadeh, NJ Mulder - Microbial Genomics in Sustainable …, 2019 - Springer
Due to their tendency to have a high recombination rate, bacterial genomes are highly
diverse across different strains. This diversity may even be in the form of the presence or …

High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug …

A Jamet, J Guglielmini, B Brancotte… - Journal of Clinical …, 2021 - Am Soc Microbiol
Staphylococcus epidermidis is a pathogen emerging worldwide as a leading cause of health
care-associated infections. A standardized high-resolution typing method to document …

A pan-genome wide association study to identify genes associated with invasive Streptococcus pneumoniae

A Iranzadeh - 2023 - open.uct.ac.za
Streptococcus pneumoniae (pneumococcus) is one of the leading causes of mortality in
Africa. It asymptomatically colonizes the human nasopharynx. The invasive pneumococcal …