A timeline of tumour-associated macrophage biology

L Cassetta, JW Pollard - Nature Reviews Cancer, 2023 - nature.com
Tumour progression is modulated by the local microenvironment. This environment is
populated by many immune cells, of which macrophages are among the most abundant …

The epigenetic basis of cellular heterogeneity

B Carter, K Zhao - Nature Reviews Genetics, 2021 - nature.com
Single-cell sequencing-based methods for profiling gene transcript levels have revealed
substantial heterogeneity in expression levels among morphologically indistinguishable …

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex

Y Zhang, K Chen, SA Sloan, ML Bennett… - Journal of …, 2014 - Soc Neuroscience
The major cell classes of the brain differ in their developmental processes, metabolism,
signaling, and function. To better understand the functions and interactions of the cell types …

Cancer transcriptome profiling at the juncture of clinical translation

M Cieślik, AM Chinnaiyan - Nature Reviews Genetics, 2018 - nature.com
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …

Using single‐cell genomics to understand developmental processes and cell fate decisions

JA Griffiths, A Scialdone, JC Marioni - Molecular systems biology, 2018 - embopress.org
High‐throughput‐omics techniques have revolutionised biology, allowing for thorough and
unbiased characterisation of the molecular states of biological systems. However, cellular …

Transcriptomics technologies

R Lowe, N Shirley, M Bleackley, S Dolan… - PLoS computational …, 2017 - journals.plos.org
Transcriptomics technologies are the techniques used to study an organism's transcriptome,
the sum of all of its RNA transcripts. The information content of an organism is recorded in …

[HTML][HTML] COVID-19 vasculopathy: mounting evidence for an indirect mechanism of endothelial injury

RF Nicosia, G Ligresti, N Caporarello, S Akilesh… - The American journal of …, 2021 - Elsevier
Patients with coronavirus disease 2019 (COVID-19) who are critically ill develop vascular
complications characterized by thrombosis of small, medium, and large vessels. Dysfunction …

Next-generation DNA sequencing

J Shendure, H Ji - Nature biotechnology, 2008 - nature.com
DNA sequence represents a single format onto which a broad range of biological
phenomena can be projected for high-throughput data collection. Over the past three years …

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

Q Pan, O Shai, LJ Lee, BJ Frey, BJ Blencowe - Nature genetics, 2008 - nature.com
We carried out the first analysis of alternative splicing complexity in human tissues using
mRNA-Seq data. New splice junctions were detected in∼ 20% of multiexon genes, many of …

Next-generation DNA sequencing methods

ER Mardis - Annu. Rev. Genomics Hum. Genet., 2008 - annualreviews.org
Recent scientific discoveries that resulted from the application of next-generation DNA
sequencing technologies highlight the striking impact of these massively parallel platforms …