Cis-regulatory sequences in plants: their importance, discovery, and future challenges
The identification and characterization of cis-regulatory DNA sequences and how they
function to coordinate responses to developmental and environmental cues is of paramount …
function to coordinate responses to developmental and environmental cues is of paramount …
From GWAS to gene: transcriptome-wide association studies and other methods to functionally understand GWAS discoveries
B Li, MD Ritchie - Frontiers in genetics, 2021 - frontiersin.org
Since their inception, genome-wide association studies (GWAS) have identified more than a
hundred thousand single nucleotide polymorphism (SNP) loci that are associated with …
hundred thousand single nucleotide polymorphism (SNP) loci that are associated with …
Genome-wide association studies in plants: the missing heritability is in the field
Genome-wide association studies in plants: the missing heritability is in the field | Genome
Biology Skip to main content SpringerLink Account Menu Find a journal Publish with us …
Biology Skip to main content SpringerLink Account Menu Find a journal Publish with us …
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
Genetic differences between Arabidopsis thaliana accessions underlie the plant's extensive
phenotypic variation, and until now these have been interpreted largely in the context of the …
phenotypic variation, and until now these have been interpreted largely in the context of the …
Natural variation in Arabidopsis: from molecular genetics to ecological genomics
D Weigel - Plant physiology, 2012 - academic.oup.com
One of the most remarkable biological insights in the past 30 years has been that many
genetic programs for complex traits, such as flower or limb development, are shared across …
genetic programs for complex traits, such as flower or limb development, are shared across …
Metabolomics-assisted breeding: a viable option for crop improvement?
AR Fernie, N Schauer - Trends in genetics, 2009 - cell.com
Metabolomics approaches enable the parallel assessment of the levels of a broad range of
metabolites and have been documented to have great value in both phenotyping and …
metabolites and have been documented to have great value in both phenotyping and …
Genetics of trans-regulatory variation in gene expression
Heritable variation in gene expression forms a crucial bridge between genomic variation
and the biology of many traits. However, most expression quantitative trait loci (eQTLs) …
and the biology of many traits. However, most expression quantitative trait loci (eQTLs) …
RNA sequencing reveals the complex regulatory network in the maize kernel
RNA sequencing can simultaneously identify exonic polymorphisms and quantitate gene
expression. Here we report RNA sequencing of developing maize kernels from 368 inbred …
expression. Here we report RNA sequencing of developing maize kernels from 368 inbred …
Alternative splicing: enhancing ability to cope with stress via transcriptome plasticity
AM Mastrangelo, D Marone, G Laidò, AM De Leonardis… - Plant Science, 2012 - Elsevier
Alternative splicing is a mechanism for the regulation of gene expression that is widespread
in higher eukaryotes. Genome-wide approaches, based on comparison of expressed and …
in higher eukaryotes. Genome-wide approaches, based on comparison of expressed and …
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast
É Caudal, V Loegler, F Dutreux, N Vakirlis… - Nature Genetics, 2024 - nature.com
Gene expression is an essential step in the translation of genotypes into phenotypes.
However, little is known about the transcriptome architecture and the underlying genetic …
However, little is known about the transcriptome architecture and the underlying genetic …