[HTML][HTML] DNA methylation-based diagnostic, prognostic, and predictive biomarkers in colorectal cancer

D Müller, B Győrffy - Biochimica et Biophysica Acta (BBA)-Reviews on …, 2022 - Elsevier
DNA methylation is an epigenetic mechanism regulating gene expression. Changes in DNA
methylation were suggested to be useful biomarkers for diagnosis, and for the determination …

Computational oncology in the multi-omics era: state of the art

G de Anda-Jáuregui, E Hernández-Lemus - Frontiers in oncology, 2020 - frontiersin.org
Cancer is the quintessential complex disease. As technologies evolve faster each day, we
are able to quantify the different layers of biological elements that contribute to the …

Prediction of survival and recurrence in patients with pancreatic cancer by integrating multi-omics data

B Baek, H Lee - Scientific reports, 2020 - nature.com
Predicting the prognosis of pancreatic cancer is important because of the very low survival
rates of patients with this particular cancer. Although several studies have used microRNA …

Multi-OMICS approaches in cancer biology: New era in cancer therapy

S Chakraborty, G Sharma, S Karmakar… - Biochimica et Biophysica …, 2024 - Elsevier
Innovative multi-omics frameworks integrate diverse datasets from the same patients to
enhance our understanding of the molecular and clinical aspects of cancers. Advanced …

Epigenetics of alcohol use disorder—A review of recent advances in DNA methylation profiling

MJ Longley, J Lee, J Jung, FW Lohoff - Addiction biology, 2021 - Wiley Online Library
Alcohol use disorder (AUD) is a major contributor to morbidity and mortality worldwide.
Although there is a heritable component, the etiology of AUD is complex and can involve …

[HTML][HTML] DNA methylation-regulated QPCT promotes sunitinib resistance by increasing HRAS stability in renal cell carcinoma

T Zhao, Y Bao, X Gan, J Wang, Q Chen, Z Dai, B Liu… - Theranostics, 2019 - ncbi.nlm.nih.gov
Rationale: Although sunitinib has been shown to improve the survival rate of advanced renal
cell carcinoma (RCC) patients, poor drug response is a major challenge that reduces patient …

Laboratory methods to decipher epigenetic signatures: a comparative review

R Halabian, V Arshad, A Ahmadi, P Saeedi… - Cellular & Molecular …, 2021 - Springer
Epigenetics refers to nucleotide sequence-independent events, and heritable changes,
including DNA methylation and histone modification (as the two main processes) …

[HTML][HTML] Computational challenges in detection of cancer using cell-free DNA methylation

M Sharma, RK Verma, S Kumar, V Kumar - Computational and Structural …, 2022 - Elsevier
Cell-free DNA (cfDNA) methylation profiling is considered promising and potentially reliable
for liquid biopsy to study progress of diseases and develop reliable and consistent …

A new approach to epigenome-wide discovery of non-invasive methylation biomarkers for colorectal cancer screening in circulating cell-free DNA using pooled …

M Gallardo-Gómez, S Moran, M Páez de la Cadena… - Clinical …, 2018 - Springer
Background Colorectal cancer is the fourth cause of cancer-related deaths worldwide,
though detection at early stages associates with good prognosis. Thus, there is a clear …

Characterizing the properties of bisulfite sequencing data: maximizing power and sensitivity to identify between-group differences in DNA methylation

D Seiler Vellame, I Castanho, A Dahir, J Mill, E Hannon - BMC genomics, 2021 - Springer
Background The combination of sodium bisulfite treatment with highly-parallel sequencing is
a common method for quantifying DNA methylation across the genome. The power to detect …