Recognition of target site in various forms of DNA and RNA by peptide nucleic acid (PNA): From fundamentals to practical applications

X Liang, M Liu, M Komiyama - Bulletin of the Chemical Society of …, 2021 - academic.oup.com
Peptide nucleic acid (PNA) is a DNA analog, in which the sugar-phosphate backbone in
DNA is replaced by poly [N-(2-aminoethyl) glycine]. Since its discovery in the early 1990s …

Triplex-forming peptide nucleic acids as emerging ligands to modulate structure and function of complex RNAs

M Katkevics, JA MacKay, E Rozners - Chemical Communications, 2024 - pubs.rsc.org
Over the last three decades, our view of RNA has changed from a simple intermediate
supporting protein synthesis to a major regulator of biological processes. In the expanding …

Fluorescence sensing of the panhandle structure of the influenza a virus RNA promoter by thiazole orange base surrogate-carrying peptide nucleic acid conjugated …

Y Sato, H Miura, T Tanabe, CU Okeke… - Analytical …, 2022 - ACS Publications
We have developed a new class of triplex-forming peptide nucleic acid (PNA)-based
fluorogenic probes for sensing of the panhandle structure of the influenza A virus (IAV) RNA …

Kinetic analysis of highly effective triplex formation between a small molecule–peptide nucleic acid conjugate probe and the influenza A virus RNA promoter region at …

CU Okeke, H Miura, Y Sato, S Nishizawa - Organic & Biomolecular …, 2023 - pubs.rsc.org
In order to overcome the pH limitations of triplex-forming peptide nucleic acid (PNA) in
binding to double-stranded RNA (dsRNA), we have recently proposed a new design of …

Classical thiazole orange and its regioisomer as fluorogenic probes for nucleolar RNA imaging in living cells

M He, Y Sato, S Nishizawa - Analyst, 2023 - pubs.rsc.org
In contrast to well-established DNA-selective dyes for live cell imaging, RNA-selective dyes
have been less developed owing to the challenges of making small molecules have RNA …

A small-molecule fluorescence probe ANP77 for sensing RNA internal loop of C, U and A/CC motifs and their binding molecules

B Das, A Murata, K Nakatani - Nucleic acids research, 2021 - academic.oup.com
Small-molecules interacting with particular RNAs and modulating their functions are vital
tools for RNA-targeting drug discovery. Considering the substantial distribution of the …

Forced intercalation-induced light-up peptides as fluorogenic indicators for HIV-1 TAR RNA-ligand assay

ETT Lee, Y Sato, AF Ujuagu, S Nishizawa - Analyst, 2024 - pubs.rsc.org
Fluorescence indicators capable of binding to human immunodeficiency virus-1 (HIV-1)
trans-activation responsive (TAR) RNA are powerful tools for the exploratory studies of the …

Detecting the FLJ22447 lncRNA in Ovarian Cancer with Cyclopentane-Modified FIT-PNAs (cpFIT-PNAs)

ST Mannully, R Mahajna, H Nazzal, S Maree, H Zheng… - Biomolecules, 2024 - mdpi.com
Ovarian cancer (OC) is one of the most lethal gynecologic cancers that is typically
diagnosed at the very late stage of disease progression. Thus, there is an unmet need to …

[HTML][HTML] Fine-tuning of highly bright benzo [c, d] indole-oxazolopyridine cyanine dye for nucleolar RNA imaging in living cells

N Togashi, M Nagaoka, K Higuchi, Y Yoshino, Y Wu… - Talanta Open, 2024 - Elsevier
Here we report on fine-tuning of highly bright fluorogenic cyanine dye, benzo [c, d] indole-
oxazolo [5, 4-c] pyridine (BIOP: λ em= 570 nm, Φ free= 0.00038, Φ bound= 0.52), recently …

Spectroscopic, thermodynamic and kinetic analysis of selective triplex formation by peptide nucleic acid with double‐stranded RNA over its DNA counterpart

T Sato, Y Sato, S Nishizawa - Biopolymers, 2022 - Wiley Online Library
Unlike conventional triplex‐forming oligonucleotide (TFO), triplex‐forming peptide nucleic
acid (PNA) can tightly bind with double‐stranded RNA (dsRNA) than double‐stranded DNA …