Network for network concept offers new insights into host-SARS-CoV-2 protein interactions and potential novel targets for developing antiviral drugs

N Eskandarzade, A Ghorbani, S Samarfard… - Computers in biology …, 2022 - Elsevier
Abstract SARS-CoV-2, the causal agent of COVID-19, is primarily a pulmonary virus that can
directly or indirectly infect several organs. Despite many studies carried out during the …

Predicting Parkinson disease related genes based on PyFeat and gradient boosted decision tree

M Helmy, E Eldaydamony, N Mekky, M Elmogy… - Scientific Reports, 2022 - nature.com
Identifying genes related to Parkinson's disease (PD) is an active research topic in
biomedical analysis, which plays a critical role in diagnosis and treatment. Recently, many …

GANLDA: graph attention network for lncRNA-disease associations prediction

W Lan, X Wu, Q Chen, W Peng, J Wang, YP Chen - Neurocomputing, 2022 - Elsevier
Increasing studies have indicated that long non-coding RNAs (lncRNAs) play important
roles in many physiological and pathological pathways. Identifying lncRNA-disease …

KGANCDA: predicting circRNA-disease associations based on knowledge graph attention network

W Lan, Y Dong, Q Chen, R Zheng, J Liu… - Briefings in …, 2022 - academic.oup.com
Increasing evidences have proved that circRNA plays a significant role in the development
of many diseases. In addition, many researches have shown that circRNA can be …

LDICDL: LncRNA-disease association identification based on collaborative deep learning

W Lan, D Lai, Q Chen, X Wu, B Chen… - … ACM transactions on …, 2020 - ieeexplore.ieee.org
It has been proved that long noncoding RNA (lncRNA) plays critical roles in many human
diseases. Therefore, inferring associations between lncRNAs and diseases can contribute to …

Predicting microRNA-disease associations based on improved microRNA and disease similarities

W Lan, J Wang, M Li, J Liu, FX Wu… - IEEE/ACM transactions …, 2016 - ieeexplore.ieee.org
MicroRNAs (miRNAs) are a type of non-coding RNAs with about~ 22nt nucleotides.
Increasing evidences have shown that miRNAs play critical roles in many human diseases …

Integrative bioinformatics approaches to map potential novel genes and pathways involved in ovarian cancer

SU Kumar, DT Kumar, R Siva, CGP Doss… - … in bioengineering and …, 2019 - frontiersin.org
Background and aims: Ovarian cancer (OC) is the seventh most commonly detected cancer
among women. This study aimed to map the hub and core genes and potential pathways …

Machine learning prediction and tau-based screening identifies potential Alzheimer's disease genes relevant to immunity

J Binder, O Ursu, C Bologa, S Jiang, N Maphis… - Communications …, 2022 - nature.com
With increased research funding for Alzheimer's disease (AD) and related disorders across
the globe, large amounts of data are being generated. Several studies employed machine …

United neighborhood closeness centrality and orthology for predicting essential proteins

G Li, M Li, J Wang, Y Li, Y Pan - IEEE/ACM transactions on …, 2018 - ieeexplore.ieee.org
Identifying essential proteins plays an important role in disease study, drug design, and
understanding the minimal requirement for cellular life. Computational methods for essential …

Predicting drug–target interaction using positive-unlabeled learning

W Lan, J Wang, M Li, J Liu, Y Li, FX Wu, Y Pan - Neurocomputing, 2016 - Elsevier
Identifying interactions between drug compounds and target proteins is an important
process in drug discovery. It is time-consuming and expensive to determine interactions …