Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics

T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …

Transcriptional elongation control in developmental gene expression, aging, and disease

Y Aoi, A Shilatifard - Molecular cell, 2023 - cell.com
The elongation stage of transcription by RNA polymerase II (RNA Pol II) is central to the
regulation of gene expression in response to developmental and environmental cues in …

Integrator endonuclease drives promoter-proximal termination at all RNA polymerase II-transcribed loci

CB Stein, AR Field, CA Mimoso, CC Zhao, KL Huang… - Molecular cell, 2022 - cell.com
Summary RNA polymerase II (RNAPII) pausing in early elongation is critical for gene
regulation. Paused RNAPII can be released into productive elongation by the kinase P-TEFb …

Structural basis of nucleosome disassembly and reassembly by RNAPII elongation complex with FACT

H Ehara, T Kujirai, M Shirouzu, H Kurumizaka… - Science, 2022 - science.org
During gene transcription, RNA polymerase II (RNAPII) traverses nucleosomes in chromatin,
but the mechanism has remained elusive. Using cryo–electron microscopy, we obtained …

[HTML][HTML] U1 snRNP increases RNA Pol II elongation rate to enable synthesis of long genes

CA Mimoso, K Adelman - Molecular cell, 2023 - cell.com
The expansion of introns within mammalian genomes poses a challenge for the production
of full-length messenger RNAs (mRNAs), with increasing evidence that these long AT-rich …

SPT6 functions in transcriptional pause/release via PAF1C recruitment

Y Aoi, AP Shah, S Ganesan, SHA Soliman, BK Cho… - Molecular cell, 2022 - cell.com
It is unclear how various factors functioning in the transcriptional elongation by RNA
polymerase II (RNA Pol II) cooperatively regulate pause/release and productive elongation …

The pausing zone and control of RNA polymerase II elongation by Spt5: Implications for the pause-release model

N Fong, RM Sheridan, S Ramachandran, DL Bentley - Molecular cell, 2022 - cell.com
The pause-release model of transcription proposes that 40–100 bases from the start site
RNA Pol II pauses, followed by release into productive elongation. Pause release is …

VIP152 is a selective CDK9 inhibitor with pre-clinical in vitro and in vivo efficacy in chronic lymphocytic leukemia

S Sher, E Whipp, J Walker, P Zhang, L Beaver… - Leukemia, 2023 - nature.com
Chronic lymphocytic leukemia (CLL) is effectively treated with targeted therapies including
Bruton tyrosine kinase inhibitors and BCL2 antagonists. When these become ineffective …

Coordinated regulation of RNA polymerase II pausing and elongation progression by PAF1

Z Wang, A Song, H Xu, S Hu, B Tao, L Peng… - Science …, 2022 - science.org
Pleiotropic transcription regulator RNA polymerase II (Pol II)–associated factor 1 (PAF1)
governs multiple transcriptional steps and the deposition of several epigenetic marks …

Structural perspectives on transcription in chromatin

S Sekine, H Ehara, T Kujirai, H Kurumizaka - Trends in Cell Biology, 2024 - cell.com
In eukaryotes, all genetic processes take place in the cell nucleus, where DNA is packaged
as chromatin in'beads-on-a-string'nucleosome arrays. RNA polymerase II (RNAPII) …