RNA‐protein interactions in an unstructured context
B Zagrovic, L Bartonek, AA Polyansky - FEBS letters, 2018 - Wiley Online Library
Despite their importance, our understanding of noncovalent RNA–protein interactions is
incomplete. This especially concerns the binding between RNA and unstructured protein …
incomplete. This especially concerns the binding between RNA and unstructured protein …
[HTML][HTML] Interactions between long non‑coding RNAs and RNA‑binding proteins in cancer
H Huang, L Li, K Wen - Oncology reports, 2021 - spandidos-publications.com
Long non‑coding RNAs (lncRNAs) fulfill important roles in the majority of cellular processes.
Previous studies have demonstrated that lncRNAs are involved in the pathogenesis of …
Previous studies have demonstrated that lncRNAs are involved in the pathogenesis of …
Screening for small-molecule modulators of long noncoding RNA-protein interactions using AlphaScreen
R Pedram Fatemi, S Salah-Uddin… - Journal of …, 2015 - journals.sagepub.com
Long non–protein coding RNAs (lncRNAs) are an important class of molecules that help
orchestrate key cellular events. Although their functional roles in cells are not well …
orchestrate key cellular events. Although their functional roles in cells are not well …
[HTML][HTML] EDLMFC: an ensemble deep learning framework with multi-scale features combination for ncRNA–protein interaction prediction
J Wang, Y Zhao, W Gong, Y Liu, M Wang, X Huang… - BMC …, 2021 - Springer
Abstract Background Non-coding RNA (ncRNA) and protein interactions play essential roles
in various physiological and pathological processes. The experimental methods used for …
in various physiological and pathological processes. The experimental methods used for …
Widespread autogenous mRNA–protein interactions detected by CLIP-seq
Autogenous interactions between mRNAs and the proteins they encode are implicated in
cellular feedback-loop regulation, but their extent and mechanistic foundation are unclear. It …
cellular feedback-loop regulation, but their extent and mechanistic foundation are unclear. It …
RCK: accurate and efficient inference of sequence-and structure-based protein–RNA binding models from RNAcompete data
Motivation: Protein–RNA interactions, which play vital roles in many processes, are
mediated through both RNA sequence and structure. CLIP-based methods, which measure …
mediated through both RNA sequence and structure. CLIP-based methods, which measure …
Dissecting noncoding and pathogen RNA–protein interactomes
RNA–protein interactions are central to biological regulation. Cross-linking
immunoprecipitation (CLIP)-seq is a powerful tool for genome-wide interrogation of RNA …
immunoprecipitation (CLIP)-seq is a powerful tool for genome-wide interrogation of RNA …
[HTML][HTML] Unveiling the hidden function of long non-coding RNA by identifying its major partner-protein
Y Yang, L Wen, H Zhu - Cell & bioscience, 2015 - Springer
Tens of thousands of long non-coding RNAs (lncRNAs) have been discovered in eukarya,
but their functions are largely unknown. Fortunately, lncRNA–protein interactions may offer …
but their functions are largely unknown. Fortunately, lncRNA–protein interactions may offer …
RPI-EDLCN: An ensemble deep learning framework based on capsule network for ncRNA–protein interaction prediction
X Li, W Qu, J Yan, J Tan - Journal of Chemical Information and …, 2023 - ACS Publications
Noncoding RNAs (ncRNAs) play crucial roles in many cellular life activities by interacting
with proteins. Identification of ncRNA-protein interactions (ncRPIs) is key to understanding …
with proteins. Identification of ncRNA-protein interactions (ncRPIs) is key to understanding …
Multimodal long noncoding RNA interaction networks: control panels for cell fate specification
Lineage specification in early development is the basis for the exquisitely precise body plan
of multicellular organisms. It is therefore critical to understand cell fate decisions in early …
of multicellular organisms. It is therefore critical to understand cell fate decisions in early …