[HTML][HTML] Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants
C Chen, Y Ge, L Lu - Frontiers in Plant Science, 2023 - frontiersin.org
Single-cell and spatial transcriptomics have diverted researchers' attention from the
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …
multicellular level to the single-cell level and spatial information. Single-cell transcriptomes …
[HTML][HTML] Analysis of meristems and plant regeneration at single-cell resolution
RY Liao, JW Wang - Current opinion in plant biology, 2023 - Elsevier
Rapid development of high-throughput single-cell RNA sequencing (scRNA-seq)
technologies offers exciting opportunities to reveal new and rare cell types, previously …
technologies offers exciting opportunities to reveal new and rare cell types, previously …
[HTML][HTML] Multiplexed single-cell 3D spatial gene expression analysis in plant tissue using PHYTOMap
Retrieving the complex responses of individual cells in the native three-dimensional tissue
context is crucial for a complete understanding of tissue functions. Here, we present …
context is crucial for a complete understanding of tissue functions. Here, we present …
Single-nucleus transcriptomes reveal spatiotemporal symbiotic perception and early response in Medicago
Establishing legume–rhizobial symbiosis requires precise coordination of complex
responses in a time-and cell type-specific manner. Encountering Rhizobium, rapid changes …
responses in a time-and cell type-specific manner. Encountering Rhizobium, rapid changes …
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
Single-cell and single-nucleus RNA-sequencing technologies capture the expression of
plant genes at an unprecedented resolution. Therefore, these technologies are gaining …
plant genes at an unprecedented resolution. Therefore, these technologies are gaining …
Cell biology of the leaf epidermis: Fate specification, morphogenesis, and coordination
As the outermost layer of plants, the epidermis serves as a critical interface between plants
and the environment. During leaf development, the differentiation of specialized epidermal …
and the environment. During leaf development, the differentiation of specialized epidermal …
Resolving plant development in space and time with single-cell genomics
Single-cell genomics technologies are ushering in a new research era. In this review, we
summarize the benefits and current challenges of using these technologies to probe the …
summarize the benefits and current challenges of using these technologies to probe the …
[HTML][HTML] Lost in space: what single-cell RNA sequencing cannot tell you
Plant scientists are rapidly integrating single-cell RNA sequencing (scRNA-seq) into their
workflows. Maximizing the potential of scRNA-seq requires a proper understanding of the …
workflows. Maximizing the potential of scRNA-seq requires a proper understanding of the …
Gynoecium and fruit development in Arabidopsis
H Herrera-Ubaldo, S de Folter - Development, 2022 - journals.biologists.com
Flowering plants produce flowers and one of the most complex floral structures is the pistil or
the gynoecium. All the floral organs differentiate from the floral meristem. Various reviews …
the gynoecium. All the floral organs differentiate from the floral meristem. Various reviews …
Challenges and perspectives in applying single nuclei RNA-seq technology in plant biology
SA Cervantes-Pérez, S Thibivillliers, S Tennant… - Plant Science, 2022 - Elsevier
Plant single-cell RNA-seq technology quantifies the abundance of plant transcripts at a
single-cell resolution. Deciphering the transcriptomes of each plant cell, their regulation …
single-cell resolution. Deciphering the transcriptomes of each plant cell, their regulation …