Challenges and opportunities in cryo-EM single-particle analysis
D Lyumkis - Journal of Biological Chemistry, 2019 - ASBMB
Cryogenic electron microscopy (cryo-EM) enables structure determination of
macromolecular objects and their assemblies. Although the techniques have been …
macromolecular objects and their assemblies. Although the techniques have been …
Brief update on endocytosis of nanomedicines
The complexity of nanoscale interactions between biomaterials and cells has limited the
realization of the ultimate vision of nanotechnology in diagnostics and therapeutics. As such …
realization of the ultimate vision of nanotechnology in diagnostics and therapeutics. As such …
New tools for automated cryo-EM single-particle analysis in RELION-4.0
D Kimanius, L Dong, G Sharov, T Nakane… - Biochemical …, 2021 - portlandpress.com
We describe new tools for the processing of electron cryo-microscopy (cryo-EM) images in
the fourth major release of the RELION software. In particular, we introduce VDAM, a …
the fourth major release of the RELION software. In particular, we introduce VDAM, a …
Automated model building and protein identification in cryo-EM maps
Interpreting electron cryo-microscopy (cryo-EM) maps with atomic models requires high
levels of expertise and labour-intensive manual intervention in three-dimensional computer …
levels of expertise and labour-intensive manual intervention in three-dimensional computer …
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Here, we describe the third major release of RELION. CPU-based vector acceleration has
been added in addition to GPU support, which provides flexibility in use of resources and …
been added in addition to GPU support, which provides flexibility in use of resources and …
nextPYP: a comprehensive and scalable platform for characterizing protein variability in situ using single-particle cryo-electron tomography
Single-particle cryo-electron tomography is an emerging technique capable of determining
the structure of proteins imaged within the native context of cells at molecular resolution …
the structure of proteins imaged within the native context of cells at molecular resolution …
Real-time cryo-electron microscopy data preprocessing with Warp
The acquisition of cryo-electron microscopy (cryo-EM) data from biological specimens must
be tightly coupled to data preprocessing to ensure the best data quality and microscope …
be tightly coupled to data preprocessing to ensure the best data quality and microscope …
Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs
Cryo-electron microscopy is a popular method for the determination of protein structures;
however, identifying a sufficient number of particles for analysis can take months of manual …
however, identifying a sufficient number of particles for analysis can take months of manual …
Cryo-EM structure of alpha-synuclein fibrils
Parkinson's disease is a progressive neuropathological disorder that belongs to the class of
synucleinopathies, in which the protein alpha-synuclein is found at abnormally high …
synucleinopathies, in which the protein alpha-synuclein is found at abnormally high …
[HTML][HTML] Cryo-electron microscopy for structural analysis of dynamic biological macromolecules
Background Since the introduction of what became today's standard for cryo-embedding of
biological macromolecules at native conditions more than 30 years ago, techniques and …
biological macromolecules at native conditions more than 30 years ago, techniques and …