[HTML][HTML] The conservation of average entropy production rate in a model of signal transduction: Information thermodynamics based on the fluctuation theorem

T Tsuruyama - Entropy, 2018 - mdpi.com
Cell signal transduction is a non-equilibrium process characterized by the reaction cascade.
This study aims to quantify and compare signal transduction cascades using a model of …

Efficient algorithm based on non-backtracking matrix for community detection in signed networks

Z Zhong, X Wang, C Qu, G Wang - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Community detection or clustering is a crucial task for understanding the structure of
complex systems. In some networks, nodes are permitted to be linked by either “positive” or …

Polypharmacology in Drug Design and Discovery—Basis for Rational Design of Multitarget Drugs

Z Wang, B Yang - Polypharmacology: Principles and Methodologies, 2022 - Springer
Chapter 3 through Chap. 11 introduces the current status of clinical applications of
polypharmacology to disease therapy. This chapter will describe the applications of …

Nonlinear thermodynamics of biological signal transduction for predicting conservation of entropy production rate

T Tsuruyama - Journal of Theoretical Biology, 2021 - Elsevier
Cell signal transduction is an example of a nonequilibrium phenomenon. In this study, a
nonequilibrium nonlinear thermodynamic model was formulated. First, we obtained a …

Pan-cancer network disorders revealed by overall and local signaling entropy

L Feng, YD Sun, C Li, YX Li, LN Chen… - Journal of Molecular …, 2021 - academic.oup.com
Tumor development is a process involving loss of the differentiation phenotype and
acquisition of stem-like characteristics, which is driven by intracellular rewiring of signaling …

[HTML][HTML] Fluctuation of information entropy measures in cell image

I Wohl, N Zurgil, Y Hakuk, M Sobolev, M Deutsch - Entropy, 2017 - mdpi.com
A simple, label-free cytometry technique is introduced. It is based on the analysis of the
fluctuation of image Gray Level Information Entropy (GLIE) which is shown to reflect …

Symmetry in cancer networks identified: Proposal for multicancer biomarkers

P Shinde, L Marrec, A Rai, A Yadav, R Kumar… - Network …, 2019 - cambridge.org
One of the most challenging problems in biomedicine and genomics is the identification of
disease biomarkers. In this study, proteomics data from seven major cancers were used to …

[HTML][HTML] Entropy in cell biology: Information thermodynamics of a binary code and szilard engine chain model of signal transduction

T Tsuruyama - Entropy, 2018 - mdpi.com
A model of signal transduction from the perspective of informational thermodynamics has
been reported in recent studies, and several important achievements have been obtained …

Catbnet: A multi network analyzer for comparing and analyzing the topology of biological networks

E Pournoor, N Elmi, A Masoudi-Nejad - Current Genomics, 2019 - ingentaconnect.com
Background: Complexity and dynamicity of biological events is a reason to use
comprehensive and holistic approaches to deal with their difficulty. Currently with advances …

[PDF][PDF] Systems biology of tumour evolution: estimating orders from omics data

LM Schäfer - 2021 - oparu.uni-ulm.de
Multi-class datasets often comprise samples of various classes united under a common
research context. Based on this limited amount of data one searches for concepts that …