[HTML][HTML] The conservation of average entropy production rate in a model of signal transduction: Information thermodynamics based on the fluctuation theorem
T Tsuruyama - Entropy, 2018 - mdpi.com
Cell signal transduction is a non-equilibrium process characterized by the reaction cascade.
This study aims to quantify and compare signal transduction cascades using a model of …
This study aims to quantify and compare signal transduction cascades using a model of …
Efficient algorithm based on non-backtracking matrix for community detection in signed networks
Community detection or clustering is a crucial task for understanding the structure of
complex systems. In some networks, nodes are permitted to be linked by either “positive” or …
complex systems. In some networks, nodes are permitted to be linked by either “positive” or …
Polypharmacology in Drug Design and Discovery—Basis for Rational Design of Multitarget Drugs
Z Wang, B Yang - Polypharmacology: Principles and Methodologies, 2022 - Springer
Chapter 3 through Chap. 11 introduces the current status of clinical applications of
polypharmacology to disease therapy. This chapter will describe the applications of …
polypharmacology to disease therapy. This chapter will describe the applications of …
Nonlinear thermodynamics of biological signal transduction for predicting conservation of entropy production rate
T Tsuruyama - Journal of Theoretical Biology, 2021 - Elsevier
Cell signal transduction is an example of a nonequilibrium phenomenon. In this study, a
nonequilibrium nonlinear thermodynamic model was formulated. First, we obtained a …
nonequilibrium nonlinear thermodynamic model was formulated. First, we obtained a …
Pan-cancer network disorders revealed by overall and local signaling entropy
L Feng, YD Sun, C Li, YX Li, LN Chen… - Journal of Molecular …, 2021 - academic.oup.com
Tumor development is a process involving loss of the differentiation phenotype and
acquisition of stem-like characteristics, which is driven by intracellular rewiring of signaling …
acquisition of stem-like characteristics, which is driven by intracellular rewiring of signaling …
[HTML][HTML] Fluctuation of information entropy measures in cell image
I Wohl, N Zurgil, Y Hakuk, M Sobolev, M Deutsch - Entropy, 2017 - mdpi.com
A simple, label-free cytometry technique is introduced. It is based on the analysis of the
fluctuation of image Gray Level Information Entropy (GLIE) which is shown to reflect …
fluctuation of image Gray Level Information Entropy (GLIE) which is shown to reflect …
Symmetry in cancer networks identified: Proposal for multicancer biomarkers
One of the most challenging problems in biomedicine and genomics is the identification of
disease biomarkers. In this study, proteomics data from seven major cancers were used to …
disease biomarkers. In this study, proteomics data from seven major cancers were used to …
[HTML][HTML] Entropy in cell biology: Information thermodynamics of a binary code and szilard engine chain model of signal transduction
T Tsuruyama - Entropy, 2018 - mdpi.com
A model of signal transduction from the perspective of informational thermodynamics has
been reported in recent studies, and several important achievements have been obtained …
been reported in recent studies, and several important achievements have been obtained …
Catbnet: A multi network analyzer for comparing and analyzing the topology of biological networks
Background: Complexity and dynamicity of biological events is a reason to use
comprehensive and holistic approaches to deal with their difficulty. Currently with advances …
comprehensive and holistic approaches to deal with their difficulty. Currently with advances …
[PDF][PDF] Systems biology of tumour evolution: estimating orders from omics data
LM Schäfer - 2021 - oparu.uni-ulm.de
Multi-class datasets often comprise samples of various classes united under a common
research context. Based on this limited amount of data one searches for concepts that …
research context. Based on this limited amount of data one searches for concepts that …