A review of bioinformatic methods for forensic DNA analyses

YY Liu, SA Harbison - Forensic Science International: Genetics, 2018 - Elsevier
Short tandem repeats, single nucleotide polymorphisms, and whole mitochondrial analyses
are three classes of markers which will play an important role in the future of forensic DNA …

HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups

A Kloss‐Brandstätter, D Pacher, S Schönherr… - Human …, 2011 - Wiley Online Library
An ongoing source of controversy in mitochondrial DNA (mtDNA) research is based on the
detection of numerous errors in mtDNA profiles that led to erroneous conclusions and false …

High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq

JL King, BL LaRue, NM Novroski, M Stoljarova… - Forensic Science …, 2014 - Elsevier
Mitochondrial DNA typing in forensic genetics has been performed traditionally using
Sanger-type sequencing. Consequently sequencing of a relatively-large target such as the …

HAPLOFIND: A New Method for High‐Throughput mt DNA Haplogroup Assignment

D Vianello, F Sevini, G Castellani, L Lomartire… - Human …, 2013 - Wiley Online Library
Deep sequencing technologies are completely revolutionizing the approach to DNA
analysis. Mitochondrial DNA (mt DNA) studies entered in the “postgenomic era”: the burst in …

Ancient DNA from an Early Neolithic Iberian population supports a pioneer colonization by first farmers

C Gamba, E Fernandez, M Tirado… - Molecular …, 2012 - Wiley Online Library
The Neolithic transition has been widely debated particularly regarding the extent to which
this revolution implied a demographic expansion from the Near East. We attempted to shed …

MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations

L Fan, YG Yao - Mitochondrion, 2011 - Elsevier
MitoTool, a web-based bioinformatics platform, is designed for deciphering human
mitochondrial DNA (mtDNA) data in batch mode. The platform has advantages in (i) parsing …

[HTML][HTML] Concept for estimating mitochondrial DNA haplogroups using a maximum likelihood approach (EMMA)

AW Röck, A Dür, M Van Oven, W Parson - Forensic Science International …, 2013 - Elsevier
The assignment of haplogroups to mitochondrial DNA haplotypes contributes substantial
value for quality control, not only in forensic genetics but also in population and medical …

Contaminations in (meta) genome data: An open issue for the scientific community

G De Simone, A Pasquadibisceglie, R Proietto… - IUBMB …, 2020 - Wiley Online Library
In recent years, the high throughput and the low cost of next‐generation sequencing (NGS)
technologies have led to an increase of the amount of (meta) genomic data, revolutionizing …

An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination

L Fan, YG Yao - Mitochondrion, 2013 - Elsevier
The determination of human mitochondrial DNA (mtDNA) haplogroups is not only crucial in
anthropological and forensic studies, but is also helpful in the medical field to prevent …

Mitochondrial DNA variation in the Viking age population of Norway

M Krzewińska, G Bjørnstad… - … of the Royal …, 2015 - royalsocietypublishing.org
The medieval Norsemen or Vikings had an important biological and cultural impact on many
parts of Europe through raids, colonization and trade, from about AD 793 to 1066. To help …