Diversity within species: interpreting strains in microbiomes

T Van Rossum, P Ferretti, OM Maistrenko… - Nature Reviews …, 2020 - nature.com
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …

The uncultured microbial majority

MS Rappé, SJ Giovannoni - Annual Reviews in Microbiology, 2003 - annualreviews.org
▪ Abstract Since the delineation of 12 bacterial phyla by comparative phylogenetic analyses
of 16S ribosomal RNA in 1987 knowledge of microbial diversity has expanded dramatically …

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

C Jain, LM Rodriguez-R, AM Phillippy… - Nature …, 2018 - nature.com
A fundamental question in microbiology is whether there is continuum of genetic diversity
among genomes, or clear species boundaries prevail instead. Whole-genome similarity …

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

J Wiedenbeck, FM Cohan - FEMS microbiology reviews, 2011 - academic.oup.com
Horizontal genetic transfer (HGT) has played an important role in bacterial evolution at least
since the origins of the bacterial divisions, and HGT still facilitates the origins of bacterial …

Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains

F Lebreton, W van Schaik, A Manson McGuire… - MBio, 2013 - Am Soc Microbiol
Enterococcus faecium, natively a gut commensal organism, emerged as a leading cause of
multidrug-resistant hospital-acquired infection in the 1980s. As the living record of its …

Video ergo sum: manipulating bodily self-consciousness

B Lenggenhager, T Tadi, T Metzinger, O Blanke - Science, 2007 - science.org
Humans normally experience the conscious self as localized within their bodily borders. This
spatial unity may break down in certain neurological conditions such as out-of-body …

Lessons learned and unlearned in periodontal microbiology

R Teles, F Teles, J Frias‐Lopez, B Paster… - Periodontology …, 2013 - Wiley Online Library
Periodontal diseases are initiated by bacterial species living in polymicrobial biofilms at or
below the gingival margin and progress largely as a result of the inflammation elicited by …

Genomics of Actinobacteria: Tracing the Evolutionary History of an Ancient Phylum

M Ventura, C Canchaya, A Tauch… - Microbiology and …, 2007 - Am Soc Microbiol
Actinobacteria constitute one of the largest phyla among Bacteria and represent gram-
positive bacteria with a high G+ C content in their DNA. This bacterial group includes …

Biodiversity of vibrios

FL Thompson, T Iida, J Swings - Microbiology and molecular …, 2004 - Am Soc Microbiol
Vibrios are ubiquitous and abundant in the aquatic environment. A high abundance of
vibrios is also detected in tissues and/or organs of various marine algae and animals, eg …

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.

E Stackebrandt, W Frederiksen… - … of systematic and …, 2002 - microbiologyresearch.org
An ad hoc committee for the re-evaluation of the species definition in bacteriology met in
Gent, Belgium, in February 2002. The committee made various recommendations regarding …