Rice functional genomics: decades' efforts and roads ahead

R Chen, Y Deng, Y Ding, J Guo, J Qiu, B Wang… - Science China Life …, 2022 - Springer
Rice (Oryza sativa L.) is one of the most important crops in the world. Since the completion of
rice reference genome sequences, tremendous progress has been achieved in …

Genetic regulation of shoot architecture

B Wang, SM Smith, J Li - Annual review of plant biology, 2018 - annualreviews.org
Shoot architecture is determined by the organization and activities of apical, axillary,
intercalary, secondary, and inflorescence meristems and by the subsequent development of …

Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size

X Song, X Meng, H Guo, Q Cheng, Y Jing… - Nature …, 2022 - nature.com
Crop genetic improvement requires balancing complex tradeoffs caused by gene pleiotropy
and linkage drags, as exemplified by IPA1 (Ideal Plant Architecture 1), a typical pleiotropic …

Structure and function of rice hybrid genomes reveal genetic basis and optimal performance of heterosis

Z Gu, J Gong, Z Zhu, Z Li, Q Feng, C Wang, Y Zhao… - Nature Genetics, 2023 - nature.com
Exploitation of crop heterosis is crucial for increasing global agriculture production.
However, the quantitative genomic analysis of heterosis was lacking, and there is currently …

Domestication of wild tomato is accelerated by genome editing

T Li, X Yang, Y Yu, X Si, X Zhai, H Zhang, W Dong… - Nature …, 2018 - nature.com
Crop improvement by inbreeding often results in fitness penalties and loss of genetic
diversity. We introduced desirable traits into four stress-tolerant wild-tomato accessions by …

Heterosis and hybrid crop breeding: a multidisciplinary review

MR Labroo, AJ Studer, JE Rutkoski - Frontiers in Genetics, 2021 - frontiersin.org
Although hybrid crop varieties are among the most popular agricultural innovations, the
rationale for hybrid crop breeding is sometimes misunderstood. Hybrid breeding is slower …

A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds

I Khanday, D Skinner, B Yang, R Mercier… - Nature, 2019 - nature.com
The molecular pathways that trigger the initiation of embryogenesis after fertilization in
flowering plants, and prevent its occurrence without fertilization, are not well understood …

A quantitative genomics map of rice provides genetic insights and guides breeding

X Wei, J Qiu, K Yong, J Fan, Q Zhang, H Hua, J Liu… - Nature Genetics, 2021 - nature.com
Extensive allelic variation in agronomically important genes serves as the basis of rice
breeding. Here, we present a comprehensive map of rice quantitative trait nucleotides …

The integrated genomics of crop domestication and breeding

X Huang, S Huang, B Han, J Li - Cell, 2022 - cell.com
As a major event in human civilization, wild plants were successfully domesticated to be
crops, largely owing to continuing artificial selection. Here, we summarize new discoveries …

Revolutions in agriculture chart a course for targeted breeding of old and new crops

Y Eshed, ZB Lippman - Science, 2019 - science.org
BACKGROUND Among tens of thousands edible plants, several hundred are cultivated
throughout the world, but fewer than a dozen comprise the majority of consumed calories …