Doubling down on genomes: polyploidy and crop plants
S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …
species are relatively recent allopolyploids, resulting from interspecific hybridization and …
Impact of transposable elements on polyploid plant genomes
CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …
Polyploidy: pitfalls and paths to a paradigm
Investigators have long searched for a polyploidy paradigm—rules or principles that might
be common following polyploidization (whole‐genome duplication, WGD). Here we attempt …
be common following polyploidization (whole‐genome duplication, WGD). Here we attempt …
Nonadditive gene expression in polyploids
Allopolyploidy involves hybridization and duplication of divergent parental genomes and
provides new avenues for gene expression. The expression levels of duplicated genes in …
provides new avenues for gene expression. The expression levels of duplicated genes in …
The Ups and Downs of Genome Size Evolution in Polyploid Species of Nicotiana (Solanaceae)
Background In studies looking at individual polyploid species, the most common patterns of
genomic change are that either genome size in the polyploid is additive (ie the sum of …
genomic change are that either genome size in the polyploid is additive (ie the sum of …
Impact of transposable elements on the organization and function of allopolyploid genomes
Transposable elements (TEs) represent an important fraction of plant genomes and are
likely to play a pivotal role in fuelling genome reorganization and functional changes …
likely to play a pivotal role in fuelling genome reorganization and functional changes …
Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation
Here, we describe the evolution of gene expression among a diversified cohort of five
allopolyploid species in the cotton genus (Gossypium). Using this phylogenetic framework …
allopolyploid species in the cotton genus (Gossypium). Using this phylogenetic framework …
Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)
Polyploidy is an important force in the evolution of flowering plants. Genomic merger and
doubling induce an extensive array of genomic effects, including immediate and long-term …
doubling induce an extensive array of genomic effects, including immediate and long-term …
Tracking the evolutionary history of polyploidy in Fragaria L.(strawberry): new insights from phylogenetic analyses of low-copy nuclear genes
M Rousseau-Gueutin, A Gaston, A Aïnouche… - Molecular phylogenetics …, 2009 - Elsevier
Phylogenetic utility of two nuclear genes (GBSSI-2 and DHAR) was explored in genus
Fragaria in order to clarify phylogenetic relationships among taxa and to elucidate the origin …
Fragaria in order to clarify phylogenetic relationships among taxa and to elucidate the origin …
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants
Transposable elements, particularly LTR-retrotransposons, comprise the primary vehicle for
genome size expansion in plants, while DNA removal through illegitimate recombination …
genome size expansion in plants, while DNA removal through illegitimate recombination …