Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

Impact of transposable elements on polyploid plant genomes

CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …

Polyploidy: pitfalls and paths to a paradigm

DE Soltis, CJ Visger, DB Marchant… - American journal of …, 2016 - Wiley Online Library
Investigators have long searched for a polyploidy paradigm—rules or principles that might
be common following polyploidization (whole‐genome duplication, WGD). Here we attempt …

Nonadditive gene expression in polyploids

MJ Yoo, X Liu, JC Pires, PS Soltis… - Annual review of …, 2014 - annualreviews.org
Allopolyploidy involves hybridization and duplication of divergent parental genomes and
provides new avenues for gene expression. The expression levels of duplicated genes in …

The Ups and Downs of Genome Size Evolution in Polyploid Species of Nicotiana (Solanaceae)

IJ Leitch, L Hanson, KY Lim, A Kovarik… - Annals of …, 2008 - academic.oup.com
Background In studies looking at individual polyploid species, the most common patterns of
genomic change are that either genome size in the polyploid is additive (ie the sum of …

Impact of transposable elements on the organization and function of allopolyploid genomes

C Parisod, K Alix, J Just, M Petit, V Sarilar… - New …, 2010 - Wiley Online Library
Transposable elements (TEs) represent an important fraction of plant genomes and are
likely to play a pivotal role in fuelling genome reorganization and functional changes …

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

LE Flagel, JF Wendel - New Phytologist, 2010 - Wiley Online Library
Here, we describe the evolution of gene expression among a diversified cohort of five
allopolyploid species in the cotton genus (Gossypium). Using this phylogenetic framework …

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)

B Chaudhary, L Flagel, RM Stupar, JA Udall… - Genetics, 2009 - academic.oup.com
Polyploidy is an important force in the evolution of flowering plants. Genomic merger and
doubling induce an extensive array of genomic effects, including immediate and long-term …

Tracking the evolutionary history of polyploidy in Fragaria L.(strawberry): new insights from phylogenetic analyses of low-copy nuclear genes

M Rousseau-Gueutin, A Gaston, A Aïnouche… - Molecular phylogenetics …, 2009 - Elsevier
Phylogenetic utility of two nuclear genes (GBSSI-2 and DHAR) was explored in genus
Fragaria in order to clarify phylogenetic relationships among taxa and to elucidate the origin …

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

JS Hawkins, SR Proulx, RA Rapp… - Proceedings of the …, 2009 - National Acad Sciences
Transposable elements, particularly LTR-retrotransposons, comprise the primary vehicle for
genome size expansion in plants, while DNA removal through illegitimate recombination …