Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota

FJ Whelan, B Waddell, SA Syed, S Shekarriz… - Nature …, 2020 - nature.com
Amplicon sequencing (for example, of the 16S rRNA gene) identifies the presence and
relative abundance of microbial community members. However, metagenomic sequencing …

Dynamics of quality attributes, flavor compounds, and microbial communities during multi-driven-levels chili fermentation: Interactions between the metabolome and …

H Liao, Y Luo, X Huang, X Xia - Food Chemistry, 2023 - Elsevier
Dynamics and correlations of quality attributes, microbial profiles, and flavor metabolites
were systematically investigated during chili fermentation on multi-salinity-driven levels …

Spatial distribution of microbial communities in the cystic fibrosis lung

D Willner, MR Haynes, M Furlan, R Schmieder… - The ISME …, 2012 - academic.oup.com
Cystic fibrosis (CF) is a common fatal genetic disorder with mortality most often resulting
from microbial infections of the lungs. Culture-independent studies of CF-associated …

[HTML][HTML] Evaluating digestion efficiency in full-scale anaerobic digesters by identifying active microbial populations through the lens of microbial activity

R Mei, T Narihiro, MK Nobu, K Kuroda, WT Liu - Scientific reports, 2016 - nature.com
Anaerobic digestion is a common technology to biologically stabilize wasted solids
produced in municipal wastewater treatment. Its efficiency is usually evaluated by …

[HTML][HTML] Mucociliary respiratory epithelium integrity in molecular defense and susceptibility to pulmonary viral infections

Adivitiya, MS Kaushik, S Chakraborty, S Veleri… - Biology, 2021 - mdpi.com
Simple Summary Mucociliary clearance constitutes an innate lung defense mechanism that
is primarily driven by ciliated cells. Respiratory mucus traps pathogens entering the airways …

Exploring the microbiome in health and disease: Implications for toxicology

E Scotti, S Boué, GL Sasso, F Zanetti… - Toxicology …, 2017 - journals.sagepub.com
The analysis of human microbiome is an exciting and rapidly expanding field of research. In
the past decade, the biological relevance of the microbiome for human health has become …

[HTML][HTML] Disturbance induced decoupling between host genetics and composition of the associated microbiome

KM Wegner, N Volkenborn, H Peter, A Eiler - BMC microbiology, 2013 - Springer
Background Studies of oyster microbiomes have revealed that a limited number of microbes,
including pathogens, can dominate microbial communities in host tissues such as gills and …

Long-term cultivation-independent microbial diversity analysis demonstrates that bacterial communities infecting the adult cystic fibrosis lung show stability and …

FA Stressmann, GB Rogers, CJ Van Der Gast, P Marsh… - Thorax, 2012 - thorax.bmj.com
Background Culture-independent analysis of the respiratory secretions of people with cystic
fibrosis (CF) has identified many bacterial species not previously detected using culture in …

[HTML][HTML] Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation

KE Price, TH Hampton, AH Gifford, EL Dolben… - Microbiome, 2013 - Springer
Background Cystic fibrosis (CF) is caused by inherited mutations in the cystic fibrosis
transmembrane conductance regulator gene and results in a lung environment that is highly …

Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system

F Ling, C Hwang, MW LeChevallier… - The ISME …, 2016 - academic.oup.com
Drinking water distribution systems (DWDSs) harbor the microorganisms in biofilms and
suspended communities, yet the diversity and spatiotemporal distribution have been studied …