[HTML][HTML] Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets

I F. Escapa, Y Huang, T Chen, M Lin, A Kokaras… - Microbiome, 2020 - Springer
Background The low cost of 16S rRNA gene sequencing facilitates population-scale
molecular epidemiological studies. Existing computational algorithms can resolve 16S rRNA …

Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention

L Cuthbertson, GB Rogers, AW Walker… - The ISME …, 2016 - academic.oup.com
Pulmonary symptoms in cystic fibrosis (CF) begin in early life with chronic lung infections
and concomitant airway inflammation leading to progressive loss of lung function. Gradual …

Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage

M Fillol, JC Auguet, EO Casamayor… - The ISME …, 2016 - academic.oup.com
Members of the archaeal Miscellaneous Crenarchaeotic Group (MCG) are among the most
successful microorganisms on the planet. During its evolutionary diversification, this very …

Microbial biofilms: impact on the pathogenesis of periodontitis, cystic fibrosis, chronic wounds and medical device-related infections

M Madalina Mihai, A Maria Holban… - Current topics in …, 2015 - ingentaconnect.com
The majority of chronic infections are associated with mono-or polymicrobial biofilms, having
a significant impact on the patients' quality of life and survival rates. Although the use of …

Cystic fibrosis therapy: a community ecology perspective

D Conrad, M Haynes, P Salamon… - American journal of …, 2013 - atsjournals.org
Current therapy for cystic fibrosis (CF) focuses on minimizing the microbial community and
the host's immune response through the aggressive use of airway clearance techniques …

Microbiota abnormalities in inflammatory airway diseases—Potential for therapy

ES Gollwitzer, BJ Marsland - Pharmacology & therapeutics, 2014 - Elsevier
Increasingly the development of novel therapeutic strategies is taking into consideration the
contribution of the intestinal microbiota to health and disease. Dysbiosis of the microbial …

Respiratory microbiota: addressing clinical questions, informing clinical practice

GB Rogers, D Shaw, RL Marsh, MP Carroll, DJ Serisier… - Thorax, 2015 - thorax.bmj.com
Over the last decade, technological advances have revolutionised efforts to understand the
role played by microbes in airways disease. With the application of ever more sophisticated …

[HTML][HTML] Deciphering the ecology of cystic fibrosis bacterial communities: towards systems-level integration

A Bevivino, G Bacci, P Drevinek, MT Nelson… - Trends in molecular …, 2019 - cell.com
Despite over a decade of cystic fibrosis (CF) microbiome research, much remains to be
learned about the overall composition, metabolic activities, and pathogenicity of the …

[HTML][HTML] Comprehensive analysis of secondary dental root canal infections: a combination of culture and culture-independent approaches reveals new insights

AC Anderson, E Hellwig, R Vespermann, A Wittmer… - PloS one, 2012 - journals.plos.org
Persistence of microorganisms or reinfections are the main reasons for failure of root canal
therapy. Very few studies to date have included culture-independent methods to assess the …

[HTML][HTML] Commensal Bacteria in the Cystic Fibrosis Airway Microbiome Reduce P. aeruginosa Induced Inflammation

A Tony-Odigie, L Wilke, S Boutin… - Frontiers in Cellular and …, 2022 - frontiersin.org
Chronic Pseudomonas aeruginosa infections play an important role in the progress of lung
disease in patients suffering from cystic fibrosis (CF). Recent studies indicate that …