Phase-field modeling of individual and collective cell migration
Cell motion is crucial in human health and development. Cells may migrate individually or in
highly coordinated groups. Cell motion results from complex intra-and extra-cellular …
highly coordinated groups. Cell motion results from complex intra-and extra-cellular …
Finite element methods for surface PDEs
G Dziuk, CM Elliott - Acta Numerica, 2013 - cambridge.org
In this article we consider finite element methods for approximating the solution of partial
differential equations on surfaces. We focus on surface finite elements on triangulated …
differential equations on surfaces. We focus on surface finite elements on triangulated …
Virtual Cell: computational tools for modeling in cell biology
DC Resasco, F Gao, F Morgan, IL Novak… - … Systems Biology and …, 2012 - Wiley Online Library
Abstract The Virtual Cell (VCell) is a general computational framework for modeling
physicochemical and electrophysiological processes in living cells. Developed by the …
physicochemical and electrophysiological processes in living cells. Developed by the …
[HTML][HTML] Solving PDEs in complex geometries: a diffuse domain approach
We extend previous work and present a general approach for solving partial differential
equations in complex, stationary, or moving geometries with Dirichlet, Neumann, and Robin …
equations in complex, stationary, or moving geometries with Dirichlet, Neumann, and Robin …
Virtual Cell modelling and simulation software environment
The Virtual Cell (VCell; http://vcell. org/) is a problem solving environment, built on a central
database, for analysis, modelling and simulation of cell biological processes. VCell …
database, for analysis, modelling and simulation of cell biological processes. VCell …
Finite element analysis for a coupled bulk–surface partial differential equation
CM Elliott, T Ranner - IMA Journal of Numerical Analysis, 2013 - ieeexplore.ieee.org
In this paper, we define a new finite element method for numerically approximating the
solution of a partial differential equation in a bulk region coupled with a surface partial …
solution of a partial differential equation in a bulk region coupled with a surface partial …
Spatial modeling of cell signaling networks
The shape of a cell, the sizes of subcellular compartments, and the spatial distribution of
molecules within the cytoplasm can all control how molecules interact to produce a cellular …
molecules within the cytoplasm can all control how molecules interact to produce a cellular …
A coupled bulk-surface model for cell polarisation
Several cellular activities, such as directed cell migration, are coordinated by an intricate
network of biochemical reactions which lead to a polarised state of the cell, in which cellular …
network of biochemical reactions which lead to a polarised state of the cell, in which cellular …
Scattered data interpolation on embedded submanifolds with restricted positive definite kernels: Sobolev error estimates
E Fuselier, GB Wright - SIAM Journal on Numerical Analysis, 2012 - SIAM
In this paper we present error estimates for kernel interpolation at scattered sites on
manifolds. The kernels we consider will be obtained by the restriction of positive definite …
manifolds. The kernels we consider will be obtained by the restriction of positive definite …
Diffusion on a sphere with localized traps: Mean first passage time, eigenvalue asymptotics, and Fekete points
A common scenario in cellular signal transduction is that a diffusing surface-bound molecule
must arrive at a localized signaling region on the cell membrane before the signaling …
must arrive at a localized signaling region on the cell membrane before the signaling …