5-Formylcytosine alters the structure of the DNA double helix
EA Raiber, P Murat, DY Chirgadze, D Beraldi… - Nature structural & …, 2015 - nature.com
Abstract The modified base 5-formylcytosine (5fC) was recently identified in mammalian
DNA and might be considered to be the'seventh'base of the genome. This nucleotide has …
DNA and might be considered to be the'seventh'base of the genome. This nucleotide has …
Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing
Active DNA demethylation in mammals involves TET-mediated iterative oxidation of 5-
methylcytosine (5mC)/5-hydroxymethylcytosine (5hmC) and subsequent excision repair of …
methylcytosine (5mC)/5-hydroxymethylcytosine (5hmC) and subsequent excision repair of …
Mapping and elucidating the function of modified bases in DNA
EA Raiber, R Hardisty, P van Delft… - Nature Reviews …, 2017 - nature.com
Chemically modified bases exist naturally in genomic DNA. Research into these bases has
been invigorated by the discovery of several modified bases in the mammalian genome, in …
been invigorated by the discovery of several modified bases in the mammalian genome, in …
Analysis of RNA modifications by second-and third-generation deep sequencing: 2020 update
Y Motorin, V Marchand - Genes, 2021 - mdpi.com
The precise mapping and quantification of the numerous RNA modifications that are present
in tRNAs, rRNAs, ncRNAs/miRNAs, and mRNAs remain a major challenge and a top priority …
in tRNAs, rRNAs, ncRNAs/miRNAs, and mRNAs remain a major challenge and a top priority …
Third‐generation sequencing of epigenetic DNA
The discovery of epigenetic bases has revolutionised the understanding of disease and
development. Among the most studied epigenetic marks are cytosines covalently modified at …
development. Among the most studied epigenetic marks are cytosines covalently modified at …
The physics of epigenetics
In higher organisms, all cells share the same genome, but every cell expresses only a
limited and specific set of genes that defines the cell type. During cell division, not only the …
limited and specific set of genes that defines the cell type. During cell division, not only the …
5-Formylcytosine yields DNA–protein cross-links in nucleosome core particles
F Li, Y Zhang, J Bai, MM Greenberg, Z Xi… - Journal of the American …, 2017 - ACS Publications
In situ generation of 5-formylcytosine (5fC) in nucleosome core particles (NCPs) reveals that
5fC leads to essential DNA–protein cross-links (DPCs). Mechanistic studies using chemical …
5fC leads to essential DNA–protein cross-links (DPCs). Mechanistic studies using chemical …
Single-base resolution analysis of 5-formyl and 5-carboxyl cytosine reveals promoter DNA methylation dynamics
Ten eleven translocation (Tet) proteins oxidize 5-methylcytosine (5mC) to 5-
hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC). 5fC …
hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC). 5fC …
Nanopores discriminate among five C5-cytosine variants in DNA
ZL Wescoe, J Schreiber, M Akeson - Journal of the American …, 2014 - ACS Publications
Individual DNA molecules can be read at single nucleotide precision using nanopores
coupled to processive enzymes. Discrimination among the four canonical bases has been …
coupled to processive enzymes. Discrimination among the four canonical bases has been …
TET family proteins: oxidation activity, interacting molecules, and functions in diseases
DNA modification is one of the most widely studied epigenetic modifications in high
eukaryotic systems. Modified DNA bases impact gene regulation beyond the primary DNA …
eukaryotic systems. Modified DNA bases impact gene regulation beyond the primary DNA …