The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes

PR Hardoim, LS Van Overbeek, G Berg… - Microbiology and …, 2015 - Am Soc Microbiol
All plants are inhabited internally by diverse microbial communities comprising bacterial,
archaeal, fungal, and protistic taxa. These microorganisms showing endophytic lifestyles …

[HTML][HTML] Sclerotinia sclerotiorum (Lib.) de Bary: Insights into the Pathogenomic Features of a Global Pathogen

MM Hossain, F Sultana, W Li, LSP Tran, MG Mostofa - Cells, 2023 - mdpi.com
Sclerotinia sclerotiorum (Lib.) de Bary is a broad host-range fungus that infects an inclusive
array of plant species and afflicts significant yield losses globally. Despite being a notorious …

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …

EffectorP: predicting fungal effector proteins from secretomes using machine learning

J Sperschneider, DM Gardiner, PN Dodds… - New …, 2016 - Wiley Online Library
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …

[HTML][HTML] Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

J Amselem, CA Cuomo, JAL van Kan, M Viaud… - PLoS …, 2011 - journals.plos.org
Sclerotinia sclerotiorum and Botrytis cinerea are closely related necrotrophic plant
pathogenic fungi notable for their wide host ranges and environmental persistence. These …

Genome evolution in filamentous plant pathogens: why bigger can be better

S Raffaele, S Kamoun - Nature Reviews Microbiology, 2012 - nature.com
Many species of fungi and oomycetes are plant pathogens of great economic importance.
Over the past 7 years, the genomes of more than 30 of these filamentous plant pathogens …

[HTML][HTML] Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

RA Ohm, N Feau, B Henrissat, CL Schoch… - PLoS …, 2012 - journals.plos.org
The class Dothideomycetes is one of the largest groups of fungi with a high level of
ecological diversity including many plant pathogens infecting a broad range of hosts. Here …

Effectors as tools in disease resistance breeding against biotrophic, hemibiotrophic, and necrotrophic plant pathogens

VGAA Vleeshouwers, RP Oliver - Molecular plant-microbe …, 2014 - Am Phytopath Society
One of most important challenges in plant breeding is improving resistance to the plethora of
pathogens that threaten our crops. The ever-growing world population, changing pathogen …

[HTML][HTML] Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum

Q Gao, K Jin, SH Ying, Y Zhang, G Xiao, Y Shang… - PLoS …, 2011 - journals.plos.org
Metarhizium spp. are being used as environmentally friendly alternatives to chemical
insecticides, as model systems for studying insect-fungus interactions, and as a resource of …

[HTML][HTML] Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth …

SB Goodwin, S Ben M'Barek, B Dhillon… - PLoS …, 2011 - journals.plos.org
The plant-pathogenic fungus Mycosphaerella graminicola (asexual stage: Septoria tritici)
causes septoria tritici blotch, a disease that greatly reduces the yield and quality of wheat …