[HTML][HTML] Nanopore sequencing and its application to the study of microbial communities

L Ciuffreda, H Rodríguez-Pérez, C Flores - Computational and structural …, 2021 - Elsevier
Since its introduction, nanopore sequencing has enhanced our ability to study complex
microbial samples through the possibility to sequence long reads in real time using …

The coral microbiome: towards an understanding of the molecular mechanisms of coral–microbiota interactions

AR Mohamed, MA Ochsenkühn… - FEMS Microbiology …, 2023 - academic.oup.com
Corals live in a complex, multipartite symbiosis with diverse microbes across kingdoms,
some of which are implicated in vital functions, such as those related to resilience against …

[HTML][HTML] The gut microbiome in myalgic encephalomyelitis (ME)/chronic fatigue syndrome (CFS)

RS König, WC Albrich, CR Kahlert, LS Bahr… - Frontiers in …, 2022 - frontiersin.org
Myalgic encephalomyelitis (ME) or Chronic Fatigue Syndrome (CFS) is a neglected,
debilitating multi-systemic disease without diagnostic marker or therapy. Despite evidence …

Probiotics and gut microbiome− Prospects and challenges in remediating heavy metal toxicity

KB Arun, A Madhavan, R Sindhu, S Emmanual… - Journal of Hazardous …, 2021 - Elsevier
The gut microbiome, often referred to as" super organ", comprises up to a hundred trillion
microorganisms, and the species diversity may vary from person to person. They perform a …

Nanopore is preferable over Illumina for 16S amplicon sequencing of the gut microbiota when species-level taxonomic classification, accurate estimation of richness …

M Szoboszlay, L Schramm, D Pinzauti, J Scerri… - Microorganisms, 2023 - mdpi.com
Nanopore sequencing is a promising technology used for 16S rRNA gene amplicon
sequencing as it can provide full-length 16S reads and has a low up-front cost that allows …

[HTML][HTML] Comparing the significance of the utilization of next generation and third generation sequencing technologies in microbial metagenomics

I Akacin, Ş Ersoy, O Doluca, M Güngörmüşler - Microbiological Research, 2022 - Elsevier
Since the exploration of sequencing began in 2005, third and next-generation sequencing
(TGS and NGS) technologies have fundamentally changed metagenomics research. These …

Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data

JL Gehrig, DM Portik, MD Driscoll… - Microbial …, 2022 - microbiologyresearch.org
A long-standing challenge in human microbiome research is achieving the taxonomic and
functional resolution needed to generate testable hypotheses about the gut microbiota's …

Exploring the gut microbiota: lifestyle choices, disease associations, and personal genomics

S Pedroza Matute, S Iyavoo - Frontiers in Nutrition, 2023 - frontiersin.org
The gut microbiota is a rich and dynamic ecosystem that actively interacts with the human
body, playing a significant role in the state of health and disease of the host. Diet, exercise …

The potential role of the microbiota in prostate cancer pathogenesis and treatment

N Pernigoni, C Guo, L Gallagher, W Yuan… - Nature Reviews …, 2023 - nature.com
The human body hosts a complex and dynamic population of trillions of microorganisms—
the microbiota—which influences the body in homeostasis and disease, including cancer …

MBPD: A multiple bacterial pathogen detection pipeline for One Health practices

X Yang, G Jiang, Y Zhang, N Wang, Y Zhang, X Wang… - Imeta, 2023 - Wiley Online Library
Bacterial pathogens are one of the major threats to biosafety and environmental health, and
advanced assessment is a prerequisite to combating bacterial pathogens. Currently, 16S …