Machine learning-guided protein engineering
Recent progress in engineering highly promising biocatalysts has increasingly involved
machine learning methods. These methods leverage existing experimental and simulation …
machine learning methods. These methods leverage existing experimental and simulation …
The crucial role of methodology development in directed evolution of selective enzymes
Directed evolution of stereo‐, regio‐, and chemoselective enzymes constitutes a unique way
to generate biocatalysts for synthetically interesting transformations in organic chemistry and …
to generate biocatalysts for synthetically interesting transformations in organic chemistry and …
Machine learning-assisted directed protein evolution with combinatorial libraries
To reduce experimental effort associated with directed protein evolution and to explore the
sequence space encoded by mutating multiple positions simultaneously, we incorporate …
sequence space encoded by mutating multiple positions simultaneously, we incorporate …
Embracing nature's catalysts: a viewpoint on the future of biocatalysis
B Hauer - Acs Catalysis, 2020 - ACS Publications
Enzymes are nature's catalysts that are designed to accelerate specific reactions up to 106
times with high selectivity. 1 The enormous potential of enzymes as catalysts for organic …
times with high selectivity. 1 The enormous potential of enzymes as catalysts for organic …
Engineered enzymes for the synthesis of pharmaceuticals and other high-value products
MT Reetz, G Qu, Z Sun - Nature Synthesis, 2024 - nature.com
Catalysis has a central role in organic synthetic methodology, especially in stereoselective
reactions. In many reactions, enantioselectivity is made possible through the use of chiral …
reactions. In many reactions, enantioselectivity is made possible through the use of chiral …
Engineering cytokine therapeutics
J Deckers, T Anbergen, AM Hokke, A de Dreu… - Nature Reviews …, 2023 - nature.com
Cytokines have pivotal roles in immunity, making them attractive as therapeutics for a variety
of immune-related disorders. However, the widespread clinical use of cytokines has been …
of immune-related disorders. However, the widespread clinical use of cytokines has been …
Opportunities and challenges for machine learning-assisted enzyme engineering
Enzymes can be engineered at the level of their amino acid sequences to optimize key
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …
Automated in silico design of homogeneous catalysts
M Foscato, VR Jensen - ACS catalysis, 2020 - ACS Publications
Catalyst discovery is increasingly relying on computational chemistry, and many of the
computational tools are currently being automated. The state of this automation and the …
computational tools are currently being automated. The state of this automation and the …
Combinatorial assembly and design of enzymes
R Lipsh-Sokolik, O Khersonsky, SP Schröder… - Science, 2023 - science.org
The design of structurally diverse enzymes is constrained by long-range interactions that are
necessary for accurate folding. We introduce an atomistic and machine learning strategy for …
necessary for accurate folding. We introduce an atomistic and machine learning strategy for …
Opportunities and challenges in design and optimization of protein function
The field of protein design has made remarkable progress over the past decade. Historically,
the low reliability of purely structure-based design methods limited their application, but …
the low reliability of purely structure-based design methods limited their application, but …