Chromatin interaction changes during the ipsc-npc model to facilitate the study of biologically significant genes involved in differentiation

WY Choi, JH Hwang, JY Lee, AN Cho, AJ Lee, I Jung… - Genes, 2020 - mdpi.com
Given the difficulties of obtaining diseased cells, differentiation of neurons from patient-
specific human induced pluripotent stem cells (iPSCs) with neural progenitor cells (NPCs) …

Insights for disease modeling from single-cell transcriptomics of iPSC-derived Ngn2-induced neurons and astrocytes across differentiation time and co-culture

D Das, S Sonthalia, G Stein-O.'Brien, MH Wahbeh… - BMC biology, 2024 - Springer
Background Trans-differentiation of human-induced pluripotent stem cells into neurons via
Ngn2-induction (hiPSC-N) has become an efficient system to quickly generate neurons a …

Electrophysiological measures from human iPSC-derived neurons are associated with schizophrenia clinical status and predict individual cognitive performance

SC Page, SR Sripathy, F Farinelli, Z Ye, Y Wang… - BioRxiv, 2021 - biorxiv.org
Neurons derived from human induced pluripotent stem cells (hiPSCs) have been used to
model basic cellular aspects of neuropsychiatric disorders, but the relationship between the …

[PDF][PDF] Nuclear Elongation Correlates with Neurite Induced Cellular Elongation During Differentiation of SH-SY5Y Neural Cells.

PS Balasubramanian - International Journal of Morphology, 2021 - intjmorphol.com
Cellular differentiation is a highly regulated process that has vast implications for the
mechanics of the cell. The interplay between differentiation induced cytoskeletal mechanical …

Two-stage linked component analysis for joint decomposition of multiple biologically related data sets

H Chen, B Caffo, G Stein-O'Brien, J Liu… - …, 2022 - academic.oup.com
Integrative analysis of multiple data sets has the potential of fully leveraging the vast amount
of high throughput biological data being generated. In particular such analysis will be …

Phenotyping neurodegeneration in human iPSCs

J Li, E Fraenkel - Annual review of biomedical data science, 2021 - annualreviews.org
Induced pluripotent stem cell (iPSC) technology holds promise for modeling
neurodegenerative diseases. Traditional approaches for disease modeling using animal …

Early Developmental Origins of Cortical Disorders Modeled in Human Neural Stem Cells

X Mato-Blanco, SK Kim, A Jourdon, S Ma… - bioRxiv, 2024 - biorxiv.org
The implications of the early phases of human telencephalic development, involving neural
stem cells (NSCs), in the etiology of cortical disorders remain elusive. Here, we explored the …

Efficient induction of neural progenitor cells from human ESC/iPSCs on Type I Collagen

P Liu, S Chen, Y Wang, X Chen, Y Guo, C Liu… - Science China Life …, 2021 - Springer
A stable, rapid and effective neural differentiation method is essential for the clinical
applications of human embryonic stem cells (ESCs) or induced pluripotent stem cells …

[HTML][HTML] Dendritic spine formation and synapse maturation in transcription factor-induced human iPSC-derived neurons

W Lin, S Shiomoto, S Yamada, H Watanabe… - Iscience, 2023 - cell.com
Synaptic maturation is reportedly limited in human induced pluripotent stem cell (iPSC)-
derived neurons. Notably, their ability to reach postnatal-like stages and form dendritic …

S-IRFindeR: stable and accurate measurement of intron retention

L Broseus, W Ritchie - BioRxiv, 2020 - biorxiv.org
Accurate quantification of intron retention levels is currently the crux for detecting and
interpreting the function of retained introns. Using both simulated and real RNA-seq …