Strain-level epidemiology of microbial communities and the human microbiome

Y Yan, LH Nguyen, EA Franzosa, C Huttenhower - Genome medicine, 2020 - Springer
The biological importance and varied metabolic capabilities of specific microbial strains
have long been established in the scientific community. Strains have, in the past, been …

Clinical detection and characterization of bacterial pathogens in the genomics era

PE Fournier, G Dubourg, D Raoult - Genome medicine, 2014 - Springer
The availability of genome sequences obtained using next-generation sequencing (NGS)
has revolutionized the field of infectious diseases. Indeed, more than 38,000 bacterial and …

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

S Conlan, PJ Thomas, C Deming, M Park… - Science translational …, 2014 - science.org
Public health officials have raised concerns that plasmid transfer between
Enterobacteriaceae species may spread resistance to carbapenems, an antibiotic class of …

[HTML][HTML] Acinetobacter baumannii: epidemiological and beta-lactamase data from two tertiary academic hospitals in Tshwane, South Africa

M Lowe, MM Ehlers, F Ismail, G Peirano… - Frontiers in …, 2018 - frontiersin.org
Acinetobacter baumannii is an opportunistic pathogen that is increasingly responsible for
hospital-acquired infections. The increasing prevalence of carbapenem resistant A …

Hospital water and opportunities for infection prevention

BK Decker, TN Palmore - Current infectious disease reports, 2014 - Springer
Nosocomial waterborne pathogens may reach patients through several modes of
transmission. Colonization of healthcare facility waterworks can occur in the proximal …

Genomics and metagenomics in medical microbiology

R Padmanabhan, AK Mishra, D Raoult… - Journal of microbiological …, 2013 - Elsevier
Over the last two decades, sequencing tools have evolved from laborious time-consuming
methodologies to real-time detection and deciphering of genomic DNA. Genome …

Genetic Variability of AdeRS Two-Component System Associated with Tigecycline Resistance in XDR-Acinetobacter baumannii Isolates

S Montana, E Vilacoba, GM Traglia, M Almuzara… - Current …, 2015 - Springer
The emergence of tigecycline resistance has increased in the last years. Although
tigecycline-resistant Acinetobacter baumannii isolates were described all over the world, few …

Real-time PCR method for qualitative and quantitative detection of Lactobacillus sakei group species targeting novel markers based on bioinformatics analysis

E Kim, SM Yang, D Kim, HY Kim - International Journal of Food …, 2021 - Elsevier
Latilactobacillus sakei group comprises four closely related species, making it difficult to
accurately distinguish them with standard markers such as the 16S rRNA gene. The …

Genomic epidemiology of multidrug‐resistant Gram‐negative organisms

SE Hawken, ES Snitkin - Annals of the New York Academy of …, 2019 - Wiley Online Library
The emergence and spread of antibiotic‐resistant Gram‐negative bacteria (rGNB) across
global healthcare networks presents a significant threat to public health. As the number of …

Widespread dispersion of the resistance element tet (B):: ISCR2 in XDR Acinetobacter baumannii isolates

E Vilacoba, M Almuzara, L Gulone… - Epidemiology & …, 2016 - cambridge.org
Acinetobacter baumannii is a significant nosocomial pathogen often associated with
extreme drug resistance (XDR). In Argentina, isolates of A. baumannii resistant to …