The yeast noncoding RNA interaction network

S Panni, A Prakash, A Bateman, S Orchard - RNA, 2017 - rnajournal.cshlp.org
This article describes the creation of the first expert manually curated noncoding RNA
interaction networks for S. cerevisiae. The RNA–RNA and RNA–protein interaction networks …

The poly (A)-binding protein Nab2 functions in RNA polymerase III transcription

LM Reuter, DM Meinel, K Sträßer - Genes & development, 2015 - genesdev.cshlp.org
RNA polymerase III (RNAPIII) synthesizes most small RNAs, the most prominent being
tRNAs. Although the basic mechanism of RNAPIII transcription is well understood, recent …

Ratcheted transport and sequential assembly of the yeast telomerase RNP

H Neumann, L Bartle, E Bonnell, RJ Wellinger - Cell Reports, 2023 - cell.com
The telomerase ribonucleoprotein particle (RNP) replenishes telomeric DNA and minimally
requires an RNA component and a catalytic protein subunit. However, telomerase RNP …

Mud2 functions in transcription by recruiting the Prp19 and TREX complexes to transcribed genes

R Minocha, V Popova, D Kopytova… - Nucleic acids …, 2018 - academic.oup.com
The different steps of gene expression are intimately linked to coordinate and regulate this
complex process. During transcription, numerous RNA-binding proteins are already loaded …

Truncating the spliceosomal 'rope protein'Prp45 results in Htz1 dependent phenotypes

K Abrhámová, M Groušlová, A Valentová, X Hao… - RNA biology, 2024 - Taylor & Francis
Spliceosome assembly contributes an important but incompletely understood aspect of
splicing regulation. Prp45 is a yeast splicing factor which runs as an extended fold through …

Cellular mRNA export factor UAP56 recognizes nucleic acid binding site of influenza virus NP protein

AK Morris, Z Wang, AL Ivey, Y Xie, PS Hill… - Biochemical and …, 2020 - Elsevier
Influenza A virus nucleoprotein (NP) is a structural component that encapsulates the viral
genome into the form of ribonucleoprotein complexes (vRNPs). Efficient assembly of vRNPs …

The disease-associated proteins Drosophila Nab2 and Ataxin-2 interact with shared RNAs and coregulate neuronal morphology

JC Rounds, EB Corgiat, C Ye, JA Behnke, SM Kelly… - Genetics, 2022 - academic.oup.com
Nab2 encodes the Drosophila melanogaster member of a conserved family of zinc finger
polyadenosine RNA-binding proteins (RBPs) linked to multiple steps in post-transcriptional …

Interconnections between RNA-processing pathways revealed by a sequencing-based genetic screen for pre-mRNA splicing mutants in fission yeast

A Larson, BJ Fair, JA Pleiss - G3: Genes, Genomes, Genetics, 2016 - academic.oup.com
Pre-mRNA splicing is an essential component of eukaryotic gene expression and is highly
conserved from unicellular yeasts to humans. Here, we present the development and …

The pentatricopeptide repeat protein Rmd9 recognizes the dodecameric element in the 3′-UTRs of yeast mitochondrial mRNAs

HS Hillen, DA Markov, ID Wojtas… - Proceedings of the …, 2021 - National Acad Sciences
Stabilization of messenger RNA is an important step in posttranscriptional gene regulation.
In the nucleus and cytoplasm of eukaryotic cells it is generally achieved by 5′ capping and …

The RNA fold interactome of evolutionary conserved RNA structures in S. cerevisiae

N Casas-Vila, S Sayols, L Pérez-Martínez… - Nature …, 2020 - nature.com
RNA-binding proteins play key roles in regulation of gene expression via recognition of
structural features in RNA molecules. Here we apply a quantitative RNA pull-down approach …