The RNA fold interactome of evolutionary conserved RNA structures in S. cerevisiae
N Casas-Vila, S Sayols, L Pérez-Martínez… - Nature …, 2020 - nature.com
RNA-binding proteins play key roles in regulation of gene expression via recognition of
structural features in RNA molecules. Here we apply a quantitative RNA pull-down approach …
structural features in RNA molecules. Here we apply a quantitative RNA pull-down approach …
Nuclear mRNA Quality Control and Cytoplasmic NMD Are Linked by the Guard Proteins Gbp2 and Hrb1
YY Lu, H Krebber - International Journal of Molecular Sciences, 2021 - mdpi.com
Pre-mRNA splicing is critical for cells, as defects in this process can lead to altered open
reading frames and defective proteins, potentially causing neurodegenerative diseases and …
reading frames and defective proteins, potentially causing neurodegenerative diseases and …
PAR-CLIP for discovering target sites of RNA-binding proteins
RNA-binding proteins (RBPs) establish posttranscriptional gene regulation (PTGR) by
coordinating the maturation, editing, transport, stability, and translation of cellular RNAs. A …
coordinating the maturation, editing, transport, stability, and translation of cellular RNAs. A …
RNA recognition by Npl3p reveals U2 snRNA-binding compatible with a chaperone role during splicing
A Moursy, A Cléry, S Gerhardy, KM Betz, S Rao… - Nature …, 2023 - nature.com
The conserved SR-like protein Npl3 promotes splicing of diverse pre-mRNAs. However, the
RNA sequence (s) recognized by the RNA Recognition Motifs (RRM1 & RRM2) of Npl3 …
RNA sequence (s) recognized by the RNA Recognition Motifs (RRM1 & RRM2) of Npl3 …
Genetic and pharmacological evidence for kinetic competition between alternative poly (A) sites in yeast
RE Turner, PF Harrison, A Swaminathan… - Elife, 2021 - elifesciences.org
Most eukaryotic mRNAs accommodate alternative sites of poly (A) addition in the
3'untranslated region in order to regulate mRNA function. Here, we present a systematic …
3'untranslated region in order to regulate mRNA function. Here, we present a systematic …
Ipa1 is an RNA polymerase II elongation factor that facilitates termination by maintaining levels of the poly (A) site endonuclease Ysh1
EL Pearson, JH Graber, SD Lee, KS Naggert… - Cell reports, 2019 - cell.com
The yeast protein Ipa1 was recently discovered to interact with the Ysh1 endonuclease of
the pre-mRNA cleavage and polyadenylation (C/P) machinery, and Ipa1 mutation impairs …
the pre-mRNA cleavage and polyadenylation (C/P) machinery, and Ipa1 mutation impairs …
Emerging properties of nuclear RNP biogenesis and export
M Oeffinger, B Montpetit - Current Opinion in Cell Biology, 2015 - Elsevier
RNA biology has recently seen an explosion of data due to advances in RNA sequencing,
proteomic, and RNA imaging technologies. In this review, we highlight progress that has …
proteomic, and RNA imaging technologies. In this review, we highlight progress that has …
Modeling the ribosomal small subunit dynamic in Saccharomyces cerevisiae based on TCP-seq data
T Neumann, T Tuller - Nucleic Acids Research, 2022 - academic.oup.com
Abstract Translation Complex Profile Sequencing (TCP-seq), a protocol that was developed
and implemented on Saccharomyces cerevisiae, provides the footprints of the small subunit …
and implemented on Saccharomyces cerevisiae, provides the footprints of the small subunit …
Loss of PABPC1 is compensated by elevated PABPC4 and correlates with transcriptome changes
Cytoplasmic poly (A) binding protein (PABP) is an essential translation factor that binds to
the 3'tail of mRNAs to promote translation and regulate mRNA stability. PABPC1 is the most …
the 3'tail of mRNAs to promote translation and regulate mRNA stability. PABPC1 is the most …
A guard protein mediated quality control mechanism monitors 5'-capping of pre-mRNAs
S Klama, AG Hirsch, UM Schneider… - Nucleic acids …, 2022 - academic.oup.com
Efficient gene expression requires properly matured mRNAs for functional transcript
translation. Several factors including the guard proteins monitor maturation and act as …
translation. Several factors including the guard proteins monitor maturation and act as …