[HTML][HTML] Genetic diversity and conservation units: dealing with the species-population continuum in the age of genomics

DJ Coates, M Byrne, C Moritz - Frontiers in Ecology and Evolution, 2018 - frontiersin.org
Current approaches to biodiversity conservation are largely based on geographic areas,
ecosystems, ecological communities, and species, with less attention on genetic diversity …

Cryptic species as a window into the paradigm shift of the species concept

C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …

[HTML][HTML] Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

Uses and misuses of environmental DNA in biodiversity science and conservation

ME Cristescu, PDN Hebert - Annual Review of Ecology …, 2018 - annualreviews.org
The study of environmental DNA (eDNA) has the potential to revolutionize biodiversity
science and conservation action by enabling the census of species on a global scale in near …

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

N Puillandre, A Lambert, S Brouillet… - Molecular ecology, 2012 - Wiley Online Library
Within uncharacterized groups, DNA barcodes, short DNA sequences that are present in a
wide range of species, can be used to assign organisms into species. We propose an …

[HTML][HTML] Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics

R Lücking, SD Leavitt, DL Hawksworth - Fungal Diversity, 2021 - Springer
Lichens are symbiotic associations resulting from interactions among fungi (primary and
secondary mycobionts), algae and/or cyanobacteria (primary and secondary photobionts) …

Coalescent-based species delimitation in an integrative taxonomy

MK Fujita, AD Leaché, FT Burbrink, JA McGuire… - Trends in ecology & …, 2012 - cell.com
The statistical rigor of species delimitation has increased dramatically over the past decade.
Coalescent theory provides powerful models for population genetic inference, and is now …

From integrative taxonomy to species description: one step beyond

E Pante, C Schoelinck, N Puillandre - Systematic Biology, 2015 - academic.oup.com
MATERIALS AND METHODS We performed a literature survey using the Web of Science
research tool, limited to the scientific articles published between 2006 and 2013, and using …

Bioinformatic challenges for DNA metabarcoding of plants and animals

E Coissac, T Riaz, N Puillandre - Molecular ecology, 2012 - Wiley Online Library
Almost all empirical studies in ecology have to identify the species involved in the ecological
process under examination. DNA metabarcoding, which couples the principles of DNA …

Synonymization of key pest species within the Bactrocera dorsalis species complex (Diptera: Tephritidae): taxonomic changes based on a review of 20 years of …

MK Schutze, N Aketarawong, W Amornsak… - Systematic …, 2015 - Wiley Online Library
Bactrocera papayae D rew & H ancock, B actrocera philippinensis D rew & H ancock, B
actrocera carambolae D rew & H ancock, and B actrocera invadens D rew, T suruta & W hite …