γδ T cells: origin and fate, subsets, diseases and immunotherapy

Y Hu, Q Hu, Y Li, L Lu, Z Xiang, Z Yin… - … and Targeted Therapy, 2023 - nature.com
The intricacy of diseases, shaped by intrinsic processes like immune system exhaustion and
hyperactivation, highlights the potential of immune renormalization as a promising strategy …

Data analysis guidelines for single-cell RNA-seq in biomedical studies and clinical applications

M Su, T Pan, QZ Chen, WW Zhou, Y Gong, G Xu… - Military Medical …, 2022 - Springer
The application of single-cell RNA sequencing (scRNA-seq) in biomedical research has
advanced our understanding of the pathogenesis of disease and provided valuable insights …

A single-cell atlas of the peripheral immune response in patients with severe COVID-19

AJ Wilk, A Rustagi, NQ Zhao, J Roque… - Nature medicine, 2020 - nature.com
There is an urgent need to better understand the pathophysiology of Coronavirus disease
2019 (COVID-19), the global pandemic caused by SARS-CoV-2, which has infected more …

The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination

F Wimmers, M Donato, A Kuo, T Ashuach, S Gupta… - Cell, 2021 - cell.com
Emerging evidence indicates a fundamental role for the epigenome in immunity. Here, we
mapped the epigenomic and transcriptional landscape of immunity to influenza vaccination …

Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19

AJ Wilk, MJ Lee, B Wei, B Parks, R Pi… - Journal of Experimental …, 2021 - rupress.org
Our understanding of protective versus pathological immune responses to SARS-CoV-2, the
virus that causes coronavirus disease 2019 (COVID-19), is limited by inadequate profiling of …

Integrated analysis of plasma and single immune cells uncovers metabolic changes in individuals with COVID-19

JW Lee, Y Su, P Baloni, D Chen… - Nature …, 2022 - nature.com
A better understanding of the metabolic alterations in immune cells during severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) infection may elucidate the wide diversity …

SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues

CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao… - Cell, 2020 - cell.com
There is pressing urgency to understand the pathogenesis of the severe acute respiratory
syndrome coronavirus clade 2 (SARS-CoV-2), which causes the disease COVID-19. SARS …

Single-cell multiomics reveals persistence of HIV-1 in expanded cytotoxic T cell clones

JA Collora, R Liu, D Pinto-Santini, N Ravindra… - Immunity, 2022 - cell.com
Understanding the drivers and markers of clonally expanding HIV-1-infected CD4+ T cells is
essential for HIV-1 eradication. We used single-cell ECCITE-seq, which captures surface …

Towards a comprehensive evaluation of dimension reduction methods for transcriptomic data visualization

H Huang, Y Wang, C Rudin, EP Browne - Communications biology, 2022 - nature.com
Dimension reduction (DR) algorithms project data from high dimensions to lower
dimensions to enable visualization of interesting high-dimensional structure. DR algorithms …

Combined protein and nucleic acid imaging reveals virus-dependent B cell and macrophage immunosuppression of tissue microenvironments

S Jiang, CN Chan, X Rovira-Clavé, H Chen, Y Bai… - Immunity, 2022 - cell.com
Understanding the mechanisms of HIV tissue persistence necessitates the ability to visualize
tissue microenvironments where infected cells reside; however, technological barriers limit …