Polyploidy: pitfalls and paths to a paradigm

DE Soltis, CJ Visger, DB Marchant… - American journal of …, 2016 - Wiley Online Library
Investigators have long searched for a polyploidy paradigm—rules or principles that might
be common following polyploidization (whole‐genome duplication, WGD). Here we attempt …

[HTML][HTML] The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable …

D Yuan, Z Tang, M Wang, W Gao, L Tu, X Jin, L Chen… - Scientific reports, 2015 - nature.com
Gossypium hirsutum contributes the most production of cotton fibre, but G. barbadense is
valued for its better comprehensive resistance and superior fibre properties. However, the …

[HTML][HTML] Wheat functional genomics in the era of next generation sequencing: an update

M Jia, J Guan, Z Zhai, S Geng, X Zhang, L Mao, A Li - The Crop Journal, 2018 - Elsevier
Bread wheat is not only an important cereal crop but also a model for study of an
allopolyploid plant with a large, highly repetitive genome. Advances in next-generation …

[HTML][HTML] Making the bread: insights from newly synthesized allohexaploid wheat

A Li, S Geng, L Zhang, D Liu, L Mao - Molecular Plant, 2015 - cell.com
Bread wheat (or common wheat, Triticum aestivum) is an allohexaploid (AABBDD, 2n= 6x=
42) that arose by hybridization between a cultivated tetraploid wheat T. turgidum (AABB, 2n …

Low-affinity SPL binding sites contribute to subgenome expression divergence in allohexaploid wheat

H Pei, W Teng, L Gao, H Gao, X Ren, Y Liu… - Science China Life …, 2023 - Springer
Expression divergence caused by genetic variation and crosstalks among subgenomes of
the allohexaploid bread wheat (Triticum aestivum. L., BBAADD) is hypothesized to increase …

Identification and characterization of QTL for spike morphological traits, plant height and heading date derived from the D genome of natural and resynthetic …

H Xu, R Zhang, M Wang, L Li, L Yan, Z Wang… - Theoretical and Applied …, 2022 - Springer
Key message QHd. cau-7D. 1 for heading date was delimited into the physical interval of
approximately 17.38 Mb harboring three CONSTANS-like zinc finger genes. Abstract Spike …

[HTML][HTML] Dynamic and reversible DNA methylation changes induced by genome separation and merger of polyploid wheat

J Yuan, W Jiao, Y Liu, W Ye, X Wang, B Liu, Q Song… - BMC biology, 2020 - Springer
Background Wheat is a powerful genetic model for studying polyploid evolution and crop
domestication. Hexaploid bread wheat was formed by two rounds of interspecific …

Changes in alternative splicing in response to domestication and polyploidization in wheat

K Yu, M Feng, G Yang, L Sun, Z Qin, J Cao… - Plant …, 2020 - academic.oup.com
Alternative splicing (AS) occurs extensively in eukaryotes as an important mechanism for
regulating transcriptome complexity and proteome diversity, but variation in the AS …

The SPL transcription factor TaSPL6 negatively regulates drought stress response in wheat

Y Zhao, J He, M Liu, J Miao, C Ma, Y Feng… - Plant Physiology and …, 2024 - Elsevier
Environmental stresses, such as heat and drought, severely affect plant growth and
development, and reduce wheat yield and quality globally. Squamosa promoter binding …

Histone H3K27 dimethylation landscapes contribute to genome stability and genetic recombination during wheat polyploidization

Y Liu, J Yuan, G Jia, W Ye, Z Jeffrey Chen… - The Plant …, 2021 - Wiley Online Library
Bread wheat (Triticum aestivum) is an allohexaploid that was formed via two
allopolyploidization events. Growing evidence suggests histone modifications are involved …