Local electric fields: from enzyme catalysis to synthetic catalyst design
This Mini-Review Article outlines recent advances in the study of local electric field (LEF)
governed enzyme catalysis and the application of the LEF principle in synthetic catalyst …
governed enzyme catalysis and the application of the LEF principle in synthetic catalyst …
Establishing the catalytic and regulatory mechanism of RNA‐based machineries
Ribonucleoprotein (RNP)‐machineries are comprised of intricate networks of long
noncoding RNAs and proteins that allow them to actively participate in transcription, RNA …
noncoding RNAs and proteins that allow them to actively participate in transcription, RNA …
Catalytic mechanism and pH dependence of a methyltransferase ribozyme (MTR1) from computational enzymology
E McCarthy, Ş Ekesan, TJ Giese, TJ Wilson… - Nucleic acids …, 2023 - academic.oup.com
A methyltransferase ribozyme (MTR1) was selected in vitro to catalyze alkyl transfer from
exogenous O 6-methylguanine (O 6mG) to a target adenine N1, and recently, high …
exogenous O 6-methylguanine (O 6mG) to a target adenine N1, and recently, high …
Structure of a 10-23 deoxyribozyme exhibiting a homodimer conformation
ER Cramer, SA Starcovic, RM Avey, AI Kaya… - Communications …, 2023 - nature.com
Deoxyribozymes (DNAzymes) are in vitro evolved DNA sequences capable of catalyzing
chemical reactions. The RNA-cleaving 10-23 DNAzyme was the first DNAzyme to be …
chemical reactions. The RNA-cleaving 10-23 DNAzyme was the first DNAzyme to be …
Biomolecular electrostatic phenomena: An evergreen field
Microscopic electrostatic phenomena are widely studied in biology due to the great
importance they have in describing molecular behavior in aqueous environments …
importance they have in describing molecular behavior in aqueous environments …
Perspectives on Computational Enzyme Modeling: From Mechanisms to Design and Drug Development
Understanding enzyme mechanisms is essential for unraveling the complex molecular
machinery of life. In this review, we survey the field of computational enzymology …
machinery of life. In this review, we survey the field of computational enzymology …
Sequence-specific structural features and solvation properties of transcription factor binding DNA motifs: insights from molecular dynamics simulation
P Patra, YQ Gao - The Journal of Physical Chemistry B, 2022 - ACS Publications
Sequence-specific recognition of transcription factor (TF) binding motifs in the target site of
DNA over the vast amount of non-target DNA is of primary importance for the transcriptional …
DNA over the vast amount of non-target DNA is of primary importance for the transcriptional …
Surface-Accelerated String Method for Locating Minimum Free Energy Paths
TJ Giese, S Ekesan, E McCarthy, Y Tao… - Journal of Chemical …, 2024 - ACS Publications
We present a surface-accelerated string method (SASM) to efficiently optimize low-
dimensional reaction pathways from the sampling performed with expensive quantum …
dimensional reaction pathways from the sampling performed with expensive quantum …
Aplicaciones de la tecnología de aptámeros en los últimos 15 años
AM Rodríguez Ramírez - 2022 - repositorio.uniandes.edu.co
Los aptámeros son cadenas de oligonucleótidos de ARN o ADN elaborados sintéticamente,
que tienen la propiedad de unirse a moléculas objetivo con alta afinidad y especificidad …
que tienen la propiedad de unirse a moléculas objetivo con alta afinidad y especificidad …