[HTML][HTML] Towards knowledge-based gene expression data mining

R Bellazzi, B Zupan - Journal of biomedical informatics, 2007 - Elsevier
The field of gene expression data analysis has grown in the past few years from being
purely data-centric to integrative, aiming at complementing microarray analysis with data …

A network model to predict the risk of death in sickle cell disease

P Sebastiani, VG Nolan, CT Baldwin… - Blood, The Journal …, 2007 - ashpublications.org
Modeling the complexity of sickle cell disease pathophysiology and severity is difficult. Using
data from 3380 patients accounting for all common genotypes of sickle cell disease …

CGBayesNets: conditional Gaussian Bayesian network learning and inference with mixed discrete and continuous data

MJ McGeachie, HH Chang… - PLoS computational …, 2014 - journals.plos.org
Bayesian Networks (BN) have been a popular predictive modeling formalism in
bioinformatics, but their application in modern genomics has been slowed by an inability to …

Probabilistic graphical models in artificial intelligence

P Larrañaga, S Moral - Applied soft computing, 2011 - Elsevier
In this paper, we review the role of probabilistic graphical models in artificial intelligence. We
start by giving an account of the early years when there was important controversy about the …

[HTML][HTML] Evolution and challenges in the design of computational systems for triage assistance

MM Abad-Grau, J Ierache, C Cervino… - Journal of biomedical …, 2008 - Elsevier
Compared with expert systems for specific disease diagnosis, knowledge-based systems to
assist decision making in triage usually try to cover a much wider domain but can use a …

Partial least squares discriminant analysis and bayesian networks for metabolomic prediction of childhood asthma

RS Kelly, MJ McGeachie, KA Lee-Sarwar, P Kachroo… - Metabolites, 2018 - mdpi.com
To explore novel methods for the analysis of metabolomics data, we compared the ability of
Partial Least Squares Discriminant Analysis (PLS-DA) and Bayesian networks (BN) to build …

Brain-wide resting-state connectivity regulation by the hippocampus and medial prefrontal cortex is associated with fluid intelligence

R Li, J Zhang, X Wu, X Wen, B Han - Brain Structure and Function, 2020 - Springer
The connectivity hub property of the hippocampus (HIP) and the medial prefrontal cortex
(MPFC) is essential for their widespread involvement in cognition; however, the cooperation …

Explainable machine learning for longitudinal multi-omic microbiome

P Laccourreye, C Bielza, P Larrañaga - Mathematics, 2022 - mdpi.com
Over the years, research studies have shown there is a key connection between the
microbial community in the gut, genes, and immune system. Understanding this association …

Naïve Bayesian classifier and genetic risk score for genetic risk prediction of a categorical trait: not so different after all!

P Sebastiani, N Solovieff, JX Sun - Frontiers in genetics, 2012 - frontiersin.org
One of the most popular modeling approaches to genetic risk prediction is to use a summary
of risk alleles in the form of an unweighted or a weighted genetic risk score, with weights that …

Predicting inhaled corticosteroid response in asthma with two associated SNPs

MJ McGeachie, AC Wu, HH Chang, JJ Lima… - The …, 2013 - nature.com
Inhaled corticosteroids (ICS) are the most commonly used controller medications prescribed
for asthma. Two single-nucleotide polymorphisms (SNPs), rs1876828 in corticotrophin …