Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR

RD Olson, R Assaf, T Brettin, N Conrad… - Nucleic acids …, 2023 - academic.oup.com
Abstract The National Institute of Allergy and Infectious Diseases (NIAID) established the
Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the …

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

M Zvyagin, A Brace, K Hippe, Y Deng… - … Journal of High …, 2023 - journals.sagepub.com
We seek to transform how new and emergent variants of pandemic-causing viruses,
specifically SARS-CoV-2, are identified and classified. By adapting large language models …

Validation of the VirCapSeq-VERT system for differential diagnosis, detection, and surveillance of viral infections

V Kapoor, T Briese, A Ranjan… - Journal of Clinical …, 2024 - Am Soc Microbiol
There is a need in clinical microbiology and public health for assays that enable sensitive
and rapid detection of infectious agents. Next Generation Sequencing (NGS) is increasingly …

[HTML][HTML] US National Institutes of Health Prioritization of SARS-CoV-2 Variants

S Turner, A Alisoltani, D Bratt… - Emerging Infectious …, 2023 - ncbi.nlm.nih.gov
Abstract Since late 2020, SARS-CoV-2 variants have regularly emerged with competitive
and phenotypic differences from previously circulating strains, sometimes with the potential …

Diversity at single nucleotide to pangenome scales among sulfur cycling bacteria in salt marshes

S Pérez Castro, EL Peredo, OU Mason… - Applied and …, 2023 - Am Soc Microbiol
Sulfur-cycling microbial communities in salt marsh rhizosphere sediments mediate a
recycling and detoxification system central to plant productivity. Despite the importance of …

Conventional and Novel Diagnostics for the Detection of SARS-CoV-2 Variants

B Andrade, R Sabino-Silva… - SARS-CoV-2 Variants …, 2024 - taylorfrancis.com
SARS-CoV-2 have challenges and uprooted the beliefs of healthcare system. While
treatment was a burden to the society, its diagnostic was not emphasized enough. Early …

[HTML][HTML] Approaching Challenges Posed by SARS-CoV-2 Genetic Variants

J de la Fuente - Pathogens, 2022 - mdpi.com
In this new collection of the most viewed and cited papers, one of the Editor's chosen
articles, published in Pathogens in 2021, addressed the impact and the concerns relating to …

Using Genome Sequence Data to Predict SARS-CoV-2 Detection Cycle Threshold Values

L Duesterwald, M Nguyen, P Christensen, SW Long… - medRxiv, 2022 - medrxiv.org
The continuing emergence of SARS-CoV-2 variants of concern (VOCs) presents a serious
public health threat, exacerbating the effects of the COVID19 pandemic. Although millions of …

[PDF][PDF] Approaching Challenges Posed by SARS-CoV-2 Genetic Variants. Pathogens 2022, 11, 1407

J de la Fuente - 2022 - digital.csic.es
In this new collection of the most viewed and cited papers, one of the Editor's chosen
articles, published in Pathogens in 2021, addressed the impact and the concerns relating to …