Identifying differentially expressed genes in RNA sequencing data with small labelled samples

Y Guo, Y Xiao, L Li - IEEE/ACM Transactions on Computational …, 2024 - ieeexplore.ieee.org
RNA-seq, including bulk RNA-seq and single-cell RNA-seq, is a next-generation
sequencing-based RNA profiling method capable of measuring gene expression patterns …

Next-generation molecular diagnosis: single-cell sequencing from bench to bedside

W Zhu, XY Zhang, SL Marjani, J Zhang… - Cellular and Molecular …, 2017 - Springer
Single-cell sequencing (SCS) is a fast-growing, exciting field in genomic medicine. It
enables the high-resolution study of cellular heterogeneity, and reveals the molecular basis …

[HTML][HTML] Transcriptome analysis reveals the potential biological function of FSCN1 in HeLa cervical cancer cells

F Guo, Y Liu, Y Cheng, Q Zhang, W Quan, Y Wei… - PeerJ, 2022 - peerj.com
Fascin actin-bundling protein 1 (FSCN1), an actin-bundling protein associated with cell
migration and invasion, is highly expressed in various tumor tissues. FSCN1 has also been …

Cancer as an ecomolecular disease and a neoplastic consortium

SR y Cajal, C Capdevila, J Hernandez-Losa… - … et Biophysica Acta (BBA …, 2017 - Elsevier
Current anticancer paradigms largely target driver mutations considered integral for cancer
cell survival and tumor progression. Although initially successful, many of these strategies …

[HTML][HTML] The Tumor Suppressor Role of Zinc Finger Protein 671 (ZNF671) in Multiple Tumors Based on Cancer Single-Cell Sequencing

J Zhang, J Luo, H Jiang, T Xie, J Zheng, Y Tian… - Frontiers in …, 2019 - frontiersin.org
In humans, zinc finger protein 671 (ZNF671) is a type of transcription factor. However, the
contribution of tumor heterogeneity to the functional role of ZNF671 remains unknown. The …

High-dimension single-cell analysis applied to cancer

L Wang, KJ Livak, CJ Wu - Molecular aspects of medicine, 2018 - Elsevier
High-dimension single-cell technology is transforming our ability to study and understand
cancer. Numerous studies and reviews have reported advances in technology development …

[HTML][HTML] Nrf2, A Target for Precision Oncology in Cancer Prognosis and Treatment

HKC Ngo, H Le, YJ Surh - Journal of Cancer Prevention, 2023 - ncbi.nlm.nih.gov
Activating nuclear factor-erythroid 2-related factor (Nrf2), a master regulator of redox
homeostasis, has been shown to suppress initiation of carcinogenesis in normal cells …

[HTML][HTML] Review of GPU implementation to process of RNA sequence on cancer

MA Rahman, RC Muniyandi - Informatics in Medicine Unlocked, 2018 - Elsevier
Nowadays, in the field of research the Graphics Processing Units (GPUs) is possibly the
maximum powerful computational hardware. Beside of powerful graphics engine, the …

cKBET: assessing goodness of batch effect correction for single-cell RNA-seq

Y Zhao, Y Guo, L Li - Frontiers of Computer Science, 2024 - Springer
Single-cell RNA sequencing reveals the gene structure and gene expression status of a
single cell, which can reflect the heterogeneity between cells. However, batch effects caused …

[HTML][HTML] Single-cell transcriptome and epigenomic reprogramming of cardiomyocyte-derived cardiac progenitor cells

X Chen, T Chakravarty, Y Zhang, X Li, JF Zhong… - Scientific Data, 2016 - nature.com
The molecular basis underlying the dedifferentiation of mammalian adult cardiomyocytes
(ACMs) into myocyte-derived cardiac progenitor cells (mCPCs) during cardiac tissue …