Differential RNA-seq: the approach behind and the biological insight gained
Highlights•RNA-seq has become the method of choice for bacterial transcriptomics.•
Differential RNA-seq (dRNA-seq) distinguishes primary and processed transcripts.•dRNA …
Differential RNA-seq (dRNA-seq) distinguishes primary and processed transcripts.•dRNA …
Widespread antisense transcription in prokaryotes
Although bacterial genomes are usually densely protein-coding, genome-wide mapping
approaches of transcriptional start sites revealed that a significant fraction of the identified …
approaches of transcriptional start sites revealed that a significant fraction of the identified …
Leaderless transcripts and small proteins are common features of the mycobacterial translational landscape
SS Shell, J Wang, P Lapierre, M Mir, MR Chase… - PLoS …, 2015 - journals.plos.org
RNA-seq technologies have provided significant insight into the transcription networks of
mycobacteria. However, such studies provide no definitive information on the translational …
mycobacteria. However, such studies provide no definitive information on the translational …
The Coding and Noncoding Architecture of the Caulobacter crescentus Genome
Caulobacter crescentus undergoes an asymmetric cell division controlled by a genetic
circuit that cycles in space and time. We provide a universal strategy for defining the coding …
circuit that cycles in space and time. We provide a universal strategy for defining the coding …
Host plant peptides elicit a transcriptional response to control the Sinorhizobium meliloti cell cycle during symbiosis
J Penterman, RP Abo, NJ De Nisco… - Proceedings of the …, 2014 - National Acad Sciences
The α-proteobacterium Sinorhizobium meliloti establishes a chronic intracellular infection
during the symbiosis with its legume hosts. Within specialized host cells, S. meliloti …
during the symbiosis with its legume hosts. Within specialized host cells, S. meliloti …
The Global Regulatory Architecture of Transcription during the Caulobacter Cell Cycle
Each Caulobacter cell cycle involves differentiation and an asymmetric cell division driven
by a cyclical regulatory circuit comprised of four transcription factors (TFs) and a DNA …
by a cyclical regulatory circuit comprised of four transcription factors (TFs) and a DNA …
Defining the Transcriptional and Post-transcriptional Landscapes of Mycobacterium smegmatis in Aerobic Growth and Hypoxia
MC Martini, Y Zhou, H Sun, SS Shell - Frontiers in microbiology, 2019 - frontiersin.org
The ability of Mycobacterium tuberculosis to infect, proliferate, and survive during long
periods in the human lungs largely depends on the rigorous control of gene expression …
periods in the human lungs largely depends on the rigorous control of gene expression …
Cell Cycle Control by the Master Regulator CtrA in Sinorhizobium meliloti
In all domains of life, proper regulation of the cell cycle is critical to coordinate genome
replication, segregation and cell division. In some groups of bacteria, eg …
replication, segregation and cell division. In some groups of bacteria, eg …
Co‐catabolism of arginine and succinate drives symbiotic nitrogen fixation
CE Flores‐Tinoco, F Tschan, T Fuhrer… - Molecular systems …, 2020 - embopress.org
Biological nitrogen fixation emerging from the symbiosis between bacteria and crop plants
holds promise to increase the sustainability of agriculture. One of the biggest hurdles for the …
holds promise to increase the sustainability of agriculture. One of the biggest hurdles for the …
Desiccation-induced cell damage in bacteria and the relevance for inoculant production
VRG Greffe, J Michiels - Applied microbiology and biotechnology, 2020 - Springer
Plant growth–promoting bacteria show great potential for use in agriculture although efficient
application remains challenging to achieve. Cells often lose viability during inoculant …
application remains challenging to achieve. Cells often lose viability during inoculant …