Differential RNA-seq: the approach behind and the biological insight gained

CM Sharma, J Vogel - Current opinion in microbiology, 2014 - Elsevier
Highlights•RNA-seq has become the method of choice for bacterial transcriptomics.•
Differential RNA-seq (dRNA-seq) distinguishes primary and processed transcripts.•dRNA …

Widespread antisense transcription in prokaryotes

J Georg, WR Hess - Microbiology Spectrum, 2018 - Am Soc Microbiol
Although bacterial genomes are usually densely protein-coding, genome-wide mapping
approaches of transcriptional start sites revealed that a significant fraction of the identified …

Leaderless transcripts and small proteins are common features of the mycobacterial translational landscape

SS Shell, J Wang, P Lapierre, M Mir, MR Chase… - PLoS …, 2015 - journals.plos.org
RNA-seq technologies have provided significant insight into the transcription networks of
mycobacteria. However, such studies provide no definitive information on the translational …

The Coding and Noncoding Architecture of the Caulobacter crescentus Genome

JM Schrader, B Zhou, GW Li, K Lasker… - PLoS …, 2014 - journals.plos.org
Caulobacter crescentus undergoes an asymmetric cell division controlled by a genetic
circuit that cycles in space and time. We provide a universal strategy for defining the coding …

Host plant peptides elicit a transcriptional response to control the Sinorhizobium meliloti cell cycle during symbiosis

J Penterman, RP Abo, NJ De Nisco… - Proceedings of the …, 2014 - National Acad Sciences
The α-proteobacterium Sinorhizobium meliloti establishes a chronic intracellular infection
during the symbiosis with its legume hosts. Within specialized host cells, S. meliloti …

The Global Regulatory Architecture of Transcription during the Caulobacter Cell Cycle

B Zhou, JM Schrader, VS Kalogeraki, E Abeliuk… - PLoS …, 2015 - journals.plos.org
Each Caulobacter cell cycle involves differentiation and an asymmetric cell division driven
by a cyclical regulatory circuit comprised of four transcription factors (TFs) and a DNA …

Defining the Transcriptional and Post-transcriptional Landscapes of Mycobacterium smegmatis in Aerobic Growth and Hypoxia

MC Martini, Y Zhou, H Sun, SS Shell - Frontiers in microbiology, 2019 - frontiersin.org
The ability of Mycobacterium tuberculosis to infect, proliferate, and survive during long
periods in the human lungs largely depends on the rigorous control of gene expression …

Cell Cycle Control by the Master Regulator CtrA in Sinorhizobium meliloti

F Pini, NJ De Nisco, L Ferri, J Penterman… - PLoS …, 2015 - journals.plos.org
In all domains of life, proper regulation of the cell cycle is critical to coordinate genome
replication, segregation and cell division. In some groups of bacteria, eg …

Co‐catabolism of arginine and succinate drives symbiotic nitrogen fixation

CE Flores‐Tinoco, F Tschan, T Fuhrer… - Molecular systems …, 2020 - embopress.org
Biological nitrogen fixation emerging from the symbiosis between bacteria and crop plants
holds promise to increase the sustainability of agriculture. One of the biggest hurdles for the …

Desiccation-induced cell damage in bacteria and the relevance for inoculant production

VRG Greffe, J Michiels - Applied microbiology and biotechnology, 2020 - Springer
Plant growth–promoting bacteria show great potential for use in agriculture although efficient
application remains challenging to achieve. Cells often lose viability during inoculant …