[HTML][HTML] Making waves: wastewater-based epidemiology for COVID-19–approaches and challenges for surveillance and prediction

D Polo, M Quintela-Baluja, A Corbishley, DL Jones… - Water research, 2020 - Elsevier
The presence of SARS-CoV-2 in the feces of infected patients and wastewater has drawn
attention, not only to the possibility of fecal-oral transmission but also to the use of …

Plant virus metagenomics: advances in virus discovery

MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …

[HTML][HTML] Detection of a novel circovirus PCV3 in pigs with cardiac and multi-systemic inflammation

TG Phan, F Giannitti, S Rossow, D Marthaler… - Virology journal, 2016 - Springer
Background Porcine circovirus 2 causes different clinical syndromes resulting in a significant
economic loss in the pork industry. Three pigs with unexplained cardiac and multi-organ …

[HTML][HTML] Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis

N Conceição-Neto, M Zeller, H Lefrère, P De Bruyn… - Scientific reports, 2015 - nature.com
A major limitation for better understanding the role of the human gut virome in health and
disease is the lack of validated methods that allow high throughput virome analysis. To …

[HTML][HTML] The diagnostic value of metagenomic next–generation sequencing in lower respiratory tract infection

Y Zheng, X Qiu, T Wang, J Zhang - Frontiers in cellular and infection …, 2021 - frontiersin.org
Lower respiratory tract infections are associated with high morbidity and mortality and
significant clinical harm. Due to the limited ability of traditional pathogen detection methods …

[HTML][HTML] Current developments and challenges in plant viral diagnostics: A systematic review

GT Mehetre, VV Leo, G Singh, A Sorokan, I Maksimov… - Viruses, 2021 - mdpi.com
Plant viral diseases are the foremost threat to sustainable agriculture, leading to several
billion dollars in losses every year. Many viruses infecting several crops have been …

Emerging investigators series: the source and fate of pandemic viruses in the urban water cycle

KR Wigginton, Y Ye, RM Ellenberg - Environmental Science: Water …, 2015 - pubs.rsc.org
Several recent high profile outbreaks such as SARS, MERS, Ebola and avian influenzas
draw attention to the continued risk of a deadly viral pandemic. In general, these enveloped …

[HTML][HTML] COVID-19 surveillance in wastewater: An epidemiological tool for the monitoring of SARS-CoV-2

S Maryam, I Ul Haq, G Yahya, M Ul Haq… - Frontiers in cellular …, 2023 - frontiersin.org
The coronavirus disease 2019 (COVID-19) pandemic has prompted a lot of questions
globally regarding the range of information about the virus's possible routes of transmission …

[HTML][HTML] A decade of RNA virus metagenomics is (not) enough

AL Greninger - Virus research, 2018 - Elsevier
It is hard to overemphasize the role that metagenomics has had on our recent understanding
of RNA virus diversity. Metagenomics in the 21st century has brought with it an explosion in …

Virome analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis ticks reveals novel highly divergent vertebrate and invertebrate viruses

R Tokarz, SH Williams, S Sameroff… - Journal of …, 2014 - Am Soc Microbiol
ABSTRACT A wide range of bacterial pathogens have been identified in ticks, yet the
diversity of viruses in ticks is largely unexplored. In the United States, Amblyomma …