[HTML][HTML] SELFIES and the future of molecular string representations
Artificial intelligence (AI) and machine learning (ML) are expanding in popularity for broad
applications to challenging tasks in chemistry and materials science. Examples include the …
applications to challenging tasks in chemistry and materials science. Examples include the …
[HTML][HTML] Review on natural products databases: where to find data in 2020
M Sorokina, C Steinbeck - Journal of cheminformatics, 2020 - Springer
Natural products (NPs) have been the centre of attention of the scientific community in the
last decencies and the interest around them continues to grow incessantly. As a …
last decencies and the interest around them continues to grow incessantly. As a …
[HTML][HTML] High-confidence structural annotation of metabolites absent from spectral libraries
MA Hoffmann, LF Nothias, M Ludwig… - Nature …, 2022 - nature.com
Untargeted metabolomics experiments rely on spectral libraries for structure annotation, but,
typically, only a small fraction of spectra can be matched. Previous in silico methods search …
typically, only a small fraction of spectra can be matched. Previous in silico methods search …
[HTML][HTML] BIOPEP-UWM database of bioactive peptides: Current opportunities
P Minkiewicz, A Iwaniak, M Darewicz - International journal of molecular …, 2019 - mdpi.com
The BIOPEP-UWM™ database of bioactive peptides (formerly BIOPEP) has recently
become a popular tool in the research on bioactive peptides, especially on these derived …
become a popular tool in the research on bioactive peptides, especially on these derived …
Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra
Metabolomics using nontargeted tandem mass spectrometry can detect thousands of
molecules in a biological sample. However, structural molecule annotation is limited to …
molecules in a biological sample. However, structural molecule annotation is limited to …
PubChem 2019 update: improved access to chemical data
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a key chemical information
resource for the biomedical research community. Substantial improvements were made in …
resource for the biomedical research community. Substantial improvements were made in …
[HTML][HTML] An open source chemical structure curation pipeline using RDKit
Abstract Background The ChEMBL database is one of a number of public databases that
contain bioactivity data on small molecule compounds curated from diverse sources …
contain bioactivity data on small molecule compounds curated from diverse sources …
PubChem 2023 update
S Kim, J Chen, T Cheng, A Gindulyte, J He… - Nucleic acids …, 2023 - academic.oup.com
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a popular chemical information
resource that serves a wide range of use cases. In the past two years, a number of changes …
resource that serves a wide range of use cases. In the past two years, a number of changes …
[HTML][HTML] MSNovelist: de novo structure generation from mass spectra
Current methods for structure elucidation of small molecules rely on finding similarity with
spectra of known compounds, but do not predict structures de novo for unknown compound …
spectra of known compounds, but do not predict structures de novo for unknown compound …
Per-and polyfluoroalkyl substances (PFAS) in PubChem: 7 million and growing
EL Schymanski, J Zhang, PA Thiessen… - Environmental …, 2023 - ACS Publications
Per-and polyfluoroalkyl substances (PFAS) are of high concern, with calls to regulate them
as a class. In 2021, the Organisation for Economic Co-operation and Development (OECD) …
as a class. In 2021, the Organisation for Economic Co-operation and Development (OECD) …