[HTML][HTML] Advances and challenges in metatranscriptomic analysis
Sequencing-based analyses of microbiomes have traditionally focused on addressing the
question of community membership and profiling taxonomic abundance through amplicon …
question of community membership and profiling taxonomic abundance through amplicon …
[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
[HTML][HTML] Detection of early seeding of Richter transformation in chronic lymphocytic leukemia
F Nadeu, R Royo, R Massoni-Badosa… - Nature medicine, 2022 - nature.com
Richter transformation (RT) is a paradigmatic evolution of chronic lymphocytic leukemia
(CLL) into a very aggressive large B cell lymphoma conferring a dismal prognosis. The …
(CLL) into a very aggressive large B cell lymphoma conferring a dismal prognosis. The …
Genomic diversity of severe acute respiratory syndrome–coronavirus 2 in patients with coronavirus disease 2019
Z Shen, Y Xiao, L Kang, W Ma, L Shi… - Clinical infectious …, 2020 - academic.oup.com
Background A novel coronavirus (CoV), severe acute respiratory syndrome (SARS)–CoV-2,
has infected> 75 000 individuals and spread to> 20 countries. It is still unclear how fast the …
has infected> 75 000 individuals and spread to> 20 countries. It is still unclear how fast the …
Non-syntrophic methanogenic hydrocarbon degradation by an archaeal species
Z Zhou, C Zhang, P Liu, L Fu, R Laso-Pérez, L Yang… - Nature, 2022 - nature.com
The methanogenic degradation of oil hydrocarbons can proceed through syntrophic
partnerships of hydrocarbon-degrading bacteria and methanogenic archaea,–. However …
partnerships of hydrocarbon-degrading bacteria and methanogenic archaea,–. However …
Identification of a novel coronavirus causing severe pneumonia in human: a descriptive study
LL Ren, YM Wang, ZQ Wu, ZC Xiang, L Guo… - Chinese medical …, 2020 - mednexus.org
Background: Human infections with zoonotic coronaviruses (CoVs), including severe acute
respiratory syndrome (SARS)-CoV and Middle East respiratory syndrome (MERS)-CoV …
respiratory syndrome (SARS)-CoV and Middle East respiratory syndrome (MERS)-CoV …
Structure and function of the global topsoil microbiome
Soils harbour some of the most diverse microbiomes on Earth and are essential for both
nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model …
nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model …
[HTML][HTML] Structure and function of the soil microbiome underlying N2O emissions from global wetlands
Wetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …
present a tomato pan-genome constructed using genome sequences of 725 …
[HTML][HTML] Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin
Background Taxonomic classification of marker-gene sequences is an important step in
microbiome analysis. Results We present q2-feature-classifier (https://github. com/qiime2/q2 …
microbiome analysis. Results We present q2-feature-classifier (https://github. com/qiime2/q2 …