[PDF][PDF] RETRACTED ARTICLE: Metagenomics for taxonomy profiling: tools and approaches

M Kumar Awasthi, B Ravindran, S Sarsaiya… - …, 2020 - Taylor & Francis
Statement of Retraction We have retracted the following article: Mukesh Kumar Awasthi, B.
Ravindran, Surendra Sarsaiya, Hongyu Chen, Steven Wainaina, Ekta Singh, Tao Liu, Sunil …

A framework for integrating microbial dispersal modes into soil ecosystem ecology

MJ Choudoir, KM DeAngelis - Iscience, 2022 - cell.com
Dispersal is a fundamental community assembly process that maintains soil microbial
biodiversity across spatial and temporal scales, yet the impact of dispersal on ecosystem …

Environmental stress mediates groundwater microbial community assembly

D Ning, Y Wang, Y Fan, J Wang, JD Van Nostrand… - Nature …, 2024 - nature.com
Community assembly describes how different ecological processes shape microbial
community composition and structure. How environmental factors impact community …

Functional attractors in microbial community assembly

S Estrela, JCC Vila, N Lu, D Bajić, M Rebolleda-Gómez… - Cell Systems, 2022 - cell.com
For microbiome biology to become a more predictive science, we must identify which
descriptive features of microbial communities are reproducible and predictable, which are …

Plant neighborhood shapes diversity and reduces interspecific variation of the phyllosphere microbiome

KM Meyer, R Porch, IE Muscettola… - The ISME …, 2022 - academic.oup.com
Microbial communities associated with plant leaf surfaces (ie, the phyllosphere) are
increasingly recognized for their role in plant health. While accumulating evidence suggests …

Environmental heterogeneity determines the ecological processes that govern bacterial metacommunity assembly in a floodplain river system

P Huber, S Metz, F Unrein, G Mayora… - The ISME …, 2020 - academic.oup.com
How diversity is structured has been a central goal of microbial ecology. In freshwater
ecosystems, selection has been found to be the main driver shaping bacterial communities …

Distinct mechanisms underlying assembly processes and interactions of microbial communities in two single-stage bioreactors coupling anammox with denitrification

D Wang, Q Luo, K Huang, XX Zhang - Chemical Engineering Journal, 2023 - Elsevier
Coupling anammox with denitrification processes are promising technologies for total
nitrogen removal from wastewater. However, the assembly processes and interactions of …

Direct quantification of ecological drift at the population level in synthetic bacterial communities

S Fodelianakis, A Valenzuela-Cuevas… - The ISME …, 2021 - academic.oup.com
In community ecology, drift refers to random births and deaths in a population. In microbial
ecology, drift is estimated indirectly via community snapshots but in this way, it is almost …

[HTML][HTML] Aquifer recharge viewed through the lens of microbial community ecology: Initial disturbance response, and impacts of species sorting versus mass effects on …

L Fillinger, K Hug, C Griebler - Water research, 2021 - Elsevier
Riverbank filtration has gained increasing importance for balancing rising groundwater
demands and securing drinking water supplies. While microbial communities are the pillar of …

Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome

S Fodelianakis, AD Washburne, M Bourquin… - The ISME …, 2022 - academic.oup.com
Glacier-fed streams (GFSs) are extreme and rapidly vanishing ecosystems, and yet they
harbor diverse microbial communities. Although our understanding of the GFS microbiome …