The complex Rcs regulatory cascade

E Wall, N Majdalani, S Gottesman - Annual review of …, 2018 - annualreviews.org
RcsB, a response regulator of the FixJ/NarL family, is at the center of a complex network of
regulatory inputs and outputs. Cell surface stress is sensed by an outer membrane …

[HTML][HTML] Model-driven insights into the effects of temperature on metabolism

P Wendering, Z Nikoloski - Biotechnology Advances, 2023 - Elsevier
Temperature affects cellular processes at different spatiotemporal scales, and identifying the
genetic and molecular mechanisms underlying temperature responses paves the way to …

Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti

GC Dicenzo, AB Benedict, M Fondi, GC Walker… - PLoS …, 2018 - journals.plos.org
Bacterial genome evolution is characterized by gains, losses, and rearrangements of
functional genetic segments. The extent to which large-scale genomic alterations influence …

[HTML][HTML] An inducible transposon mutagenesis approach for the intracellular human pathogen Chlamydia trachomatis

CE O'Neill, RJ Skilton, J Forster, DW Cleary… - Wellcome open …, 2021 - ncbi.nlm.nih.gov
Background: Chlamydia trachomatis is a prolific human pathogen that can cause serious
long-term conditions if left untreated. Recent developments in Chlamydia genetics have …

Inhibiting the reproduction of SARS-CoV-2 through perturbations in human lung cell metabolic network

H Delattre, K Sasidharan, OS Soyer - Life science alliance, 2021 - life-science-alliance.org
Viruses rely on their host for reproduction. Here, we made use of genomic and structural
information to create a biomass function capturing the amino and nucleic acid requirements …

Novel genes required for the fitness of Streptococcus pyogenes in human saliva

L Zhu, ARL Charbonneau, AS Waller, RJ Olsen… - Msphere, 2017 - Am Soc Microbiol
Streptococcus pyogenes (group A streptococcus [GAS]) causes 600 million cases of
pharyngitis each year. Despite this considerable disease burden, the molecular …

Yersiniomics, a Multi-Omics Interactive Database for Yersinia Species

P Lê-Bury, K Druart, C Savin, P Lechat… - Microbiology …, 2023 - Am Soc Microbiol
The genus Yersinia includes a large variety of nonpathogenic and life-threatening
pathogenic bacteria, which cause a broad spectrum of diseases in humans and animals …

[HTML][HTML] Fragment-based target screening as an empirical approach to prioritising targets: a case study on antibacterials

P Canning, K Birchall, CA Kettleborough, A Merritt… - Drug Discovery …, 2020 - Elsevier
Here, we describe a novel workflow combining informatic and experimental approaches to
enable evidence-based prioritising of targets from large sets in parallel. High-throughput …

Tn-Core: a toolbox for integrating Tn-seq gene essentiality data and constraint-based metabolic modeling

GC diCenzo, A Mengoni, M Fondi - ACS Synthetic Biology, 2018 - ACS Publications
The design of synthetic cells requires a detailed understanding of the relevance of genes
and gene networks underlying complex cellular phenotypes. Transposon-sequencing (Tn …

PsaF Is a Membrane-Localized pH Sensor That Regulates psaA Expression in Yersinia pestis

JD Quinn, EH Weening, VL Miller - Journal of Bacteriology, 2021 - Am Soc Microbiol
The Yersinia pestis pH 6 antigen (PsaA) forms fimbria-like structures and is required for full
virulence during bubonic plague. High temperature and low pH regulate PsaA production …