Geometric deep learning for structure-based ligand design
A pervasive challenge in drug design is determining how to expand a ligand─ a small
molecule that binds to a target biomolecule─ in order to improve various properties of the …
molecule that binds to a target biomolecule─ in order to improve various properties of the …
Fake it until you make it? generative de novo design and virtual screening of synthesizable molecules
Computational techniques, including virtual screening, de novo design, and generative
models, play an increasing role in expediting DMTA cycles for modern molecular discovery …
models, play an increasing role in expediting DMTA cycles for modern molecular discovery …
[HTML][HTML] Artificial intelligence and machine learning based intervention in medical infrastructure: a review and future trends
People in the life sciences who work with Artificial Intelligence (AI) and Machine Learning
(ML) are under increased pressure to develop algorithms faster than ever. The possibility of …
(ML) are under increased pressure to develop algorithms faster than ever. The possibility of …
[HTML][HTML] Current strategies in assessment of nanotoxicity: alternatives to in vivo animal testing
HJ Huang, YH Lee, YH Hsu, CT Liao, YF Lin… - International journal of …, 2021 - mdpi.com
Millions of experimental animals are widely used in the assessment of toxicological or
biological effects of manufactured nanomaterials in medical technology. However, the …
biological effects of manufactured nanomaterials in medical technology. However, the …
[HTML][HTML] DeepFrag: a deep convolutional neural network for fragment-based lead optimization
Machine learning has been increasingly applied to the field of computer-aided drug
discovery in recent years, leading to notable advances in binding-affinity prediction, virtual …
discovery in recent years, leading to notable advances in binding-affinity prediction, virtual …
The art and science of molecular docking
Molecular docking has become an essential part of a structural biologist's and medicinal
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a …
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a …
Docking-based generative approaches in the search for new drug candidates
Highlights•Compound enumeration coupled with docking is rapidly gaining
popularity.•Docking-based generative models are reviewed.•New taxonomy for docking …
popularity.•Docking-based generative models are reviewed.•New taxonomy for docking …
[HTML][HTML] PARP1: Structural insights and pharmacological targets for inhibition
Abstract Poly (ADP-ribose) polymerase 1 (PARP1, also known as ADPRT1) is a
multifunctional human ADP-ribosyltransferase. It plays a role in multiple DNA repair …
multifunctional human ADP-ribosyltransferase. It plays a role in multiple DNA repair …
Comparative study of deep generative models on chemical space coverage
In recent years, deep molecular generative models have emerged as promising methods for
de novo molecular design. Thanks to the rapid advance of deep learning techniques, deep …
de novo molecular design. Thanks to the rapid advance of deep learning techniques, deep …
[HTML][HTML] Thermodynamic origins of two-component multiphase condensates of proteins
Intracellular condensates are highly multi-component systems in which complex phase
behaviour can ensue, including the formation of architectures comprising multiple …
behaviour can ensue, including the formation of architectures comprising multiple …