Bioinformatic approaches for functional annotation and pathway inference in metagenomics data

C De Filippo, M Ramazzotti, P Fontana… - Briefings in …, 2012 - academic.oup.com
Metagenomic approaches are increasingly recognized as a baseline for understanding the
ecology and evolution of microbial ecosystems. The development of methods for pathway …

The promise and pitfalls of sequence-based identification of plant-pathogenic fungi and oomycetes

S Kang, MA Mansfield, B Park, DM Geiser… - …, 2010 - Am Phytopath Society
Sequences of selected marker loci have been widely used for the identification of specific
pathogens and the development of sequence-based diagnostic methods. Although such …

Molecular techniques revolutionize knowledge of basidiomycete evolution

ZL Yang - Fungal Diversity, 2011 - Springer
A brief survey towards an understanding of evolution of Basidiomycota in the last five
decades is given. Between 1960–1990 studies were based mainly on morphology …

Epitypification: should we epitypify?

KD Hyde, Y Zhang - Journal of Zhejiang University Science B, 2008 - Springer
Epitypification can solve many taxonomic problems and stabilize the understanding of
species, genera, families or orders. The aim of this paper is to illustrate how to epitypify. A …

Temporal and spatial pattern of endophytic fungi diversity of Camellia sinensis (cv. Shu Cha Zao)

Z Wu, Q Su, Y Cui, H He, J Wang, Y Zhang, Y Zhao… - BMC microbiology, 2020 - Springer
Background The experimental materials were a 60-year-old tea tree (Camellia sinensis cv.
Shu Cha Zao; SCZ)(the mother plant) and 1-year-old and 20-year-old plants of SCZ that …

Synhelminthosporium gen. et sp. nov. and Two New Species of Helminthosporium (Massarinaceae, Pleosporales) from Sichuan Province, China

Y Chen, W Tian, Y Guo, H Madrid… - Journal of Fungi, 2022 - mdpi.com
Helminthosporium is a polyphyletic genus in Massarinaceae (Pleosporales). Species of
Helminthosporium are characterized by having septate and erect conidiophores, acro …

Three challenges to contemporaneous taxonomy from a licheno-mycological perspective

R LÜCKING - Megataxa, 2020 - biotaxa.org
This paper discusses three issues that challenge contemporaneous taxonomy, with
examples from the fields of mycology and lichenology, formulated as three questions:(1) …

Where are the basal fungi? Current status on diversity, ecology, evolution, and taxonomy

VG Hurdeal, E Gentekaki, KD Hyde, R Jeewon - Biologia, 2021 - Springer
To date, the majority of mycological studies are focused on Ascomycota and Basidiomycota.
Research on basal fungi is rather limited with an obvious scarcity of data. Classification of …

Evolution of fungal phenotypic disparity

TJ Smith, PCJ Donoghue - Nature Ecology & Evolution, 2022 - nature.com
Organismal-grade multicellularity has been achieved only in animals, plants and fungi. All
three kingdoms manifest phenotypically disparate body plans but their evolution has only …

A new fungal large subunit ribosomal RNA primer for high-throughput sequencing surveys

RC Mueller, LV Gallegos-Graves… - FEMS Microbiology …, 2016 - academic.oup.com
The inclusion of phylogenetic metrics in community ecology has provided insights into
important ecological processes, particularly when combined with high-throughput …