Bioinformatic approaches for functional annotation and pathway inference in metagenomics data
Metagenomic approaches are increasingly recognized as a baseline for understanding the
ecology and evolution of microbial ecosystems. The development of methods for pathway …
ecology and evolution of microbial ecosystems. The development of methods for pathway …
The promise and pitfalls of sequence-based identification of plant-pathogenic fungi and oomycetes
Sequences of selected marker loci have been widely used for the identification of specific
pathogens and the development of sequence-based diagnostic methods. Although such …
pathogens and the development of sequence-based diagnostic methods. Although such …
Molecular techniques revolutionize knowledge of basidiomycete evolution
ZL Yang - Fungal Diversity, 2011 - Springer
A brief survey towards an understanding of evolution of Basidiomycota in the last five
decades is given. Between 1960–1990 studies were based mainly on morphology …
decades is given. Between 1960–1990 studies were based mainly on morphology …
Epitypification: should we epitypify?
KD Hyde, Y Zhang - Journal of Zhejiang University Science B, 2008 - Springer
Epitypification can solve many taxonomic problems and stabilize the understanding of
species, genera, families or orders. The aim of this paper is to illustrate how to epitypify. A …
species, genera, families or orders. The aim of this paper is to illustrate how to epitypify. A …
Temporal and spatial pattern of endophytic fungi diversity of Camellia sinensis (cv. Shu Cha Zao)
Z Wu, Q Su, Y Cui, H He, J Wang, Y Zhang, Y Zhao… - BMC microbiology, 2020 - Springer
Background The experimental materials were a 60-year-old tea tree (Camellia sinensis cv.
Shu Cha Zao; SCZ)(the mother plant) and 1-year-old and 20-year-old plants of SCZ that …
Shu Cha Zao; SCZ)(the mother plant) and 1-year-old and 20-year-old plants of SCZ that …
Synhelminthosporium gen. et sp. nov. and Two New Species of Helminthosporium (Massarinaceae, Pleosporales) from Sichuan Province, China
Helminthosporium is a polyphyletic genus in Massarinaceae (Pleosporales). Species of
Helminthosporium are characterized by having septate and erect conidiophores, acro …
Helminthosporium are characterized by having septate and erect conidiophores, acro …
Three challenges to contemporaneous taxonomy from a licheno-mycological perspective
R LÜCKING - Megataxa, 2020 - biotaxa.org
This paper discusses three issues that challenge contemporaneous taxonomy, with
examples from the fields of mycology and lichenology, formulated as three questions:(1) …
examples from the fields of mycology and lichenology, formulated as three questions:(1) …
Where are the basal fungi? Current status on diversity, ecology, evolution, and taxonomy
To date, the majority of mycological studies are focused on Ascomycota and Basidiomycota.
Research on basal fungi is rather limited with an obvious scarcity of data. Classification of …
Research on basal fungi is rather limited with an obvious scarcity of data. Classification of …
Evolution of fungal phenotypic disparity
TJ Smith, PCJ Donoghue - Nature Ecology & Evolution, 2022 - nature.com
Organismal-grade multicellularity has been achieved only in animals, plants and fungi. All
three kingdoms manifest phenotypically disparate body plans but their evolution has only …
three kingdoms manifest phenotypically disparate body plans but their evolution has only …
A new fungal large subunit ribosomal RNA primer for high-throughput sequencing surveys
RC Mueller, LV Gallegos-Graves… - FEMS Microbiology …, 2016 - academic.oup.com
The inclusion of phylogenetic metrics in community ecology has provided insights into
important ecological processes, particularly when combined with high-throughput …
important ecological processes, particularly when combined with high-throughput …