[HTML][HTML] The Cotton Centromere Contains a Ty3-gypsy-like LTR Retroelement

S Luo, J Mach, B Abramson, R Ramirez, R Schurr… - PLoS …, 2012 - journals.plos.org
The centromere is a repeat-rich structure essential for chromosome segregation; with the
long-term aim of understanding centromere structure and function, we set out to identify …

Profiling of extensively diversified plant LINE s reveals distinct plant‐specific subclades

T Heitkam, D Holtgraewe, JC Dohm… - The Plant …, 2014 - Wiley Online Library
A large fraction of eukaryotic genomes is made up of long interspersed nuclear elements
(LINE s). Due to their capability to create novel copies via error‐prone reverse transcription …

Polyploid speciation and genome evolution: lessons from recent allopolyploids

ML Ainouche, JF Wendel - … evolution, speciation, coevolution and origin of …, 2014 - Springer
Whole genome duplication (polyploidy) represents a primary mechanism of sympatric
speciation, especially in plants where it is particularly prevalent. In this chapter, we focus on …

[HTML][HTML] Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome

P Sampath, SC Lee, J Lee, NK Izzah, BS Choi, M Jin… - BMC plant biology, 2013 - Springer
Background Miniature inverted-repeat transposable elements (MITEs) are expected to play
important roles in evolution of genes and genome in plants, especially in the highly …

On the coevolution of transposable elements and plant genomes

P Civáň, M Švec, P Hauptvogel - Journal of Botany, 2011 - Wiley Online Library
Plant genomes are unique in an intriguing feature: the range of their size variation is
unprecedented among living organisms. Although polyploidization contributes to this …

Molecular characterization of a transcriptionally active Ty1/copia-like retrotransposon in Gossypium

Y Cao, Y Jiang, M Ding, S He, H Zhang, L Lin, J Rong - Plant cell reports, 2015 - Springer
Key message A transcriptionally active Ty1/copia-like retrotransposon was identified in the
genome of Gossypium barbadense. The different heat activation of this element was …

[HTML][HTML] A New Synthetic Allotetraploid (A1A1G2G2) between Gossypium herbaceum and G. australe: Bridging for Simultaneously Transferring Favorable …

Q Liu, Y Chen, Y Chen, Y Wang, J Chen, T Zhang… - PLOS …, 2015 - journals.plos.org
Gossypium herbaceum, a cultivated diploid cotton species (2n= 2x= 26, A1A1), has
favorable traits such as excellent drought tolerance and resistance to sucking insects and …

Evolutionary dynamics of transposable elements and satellite DNAs in polyploid Spartina species

D Giraud, O Lima, V Huteau, O Coriton, J Boutte… - Plant science, 2021 - Elsevier
Repeated sequences and polyploidy play a central role in plant genome dynamics. Here,
we analyze the evolutionary dynamics of repeats in tetraploid and hexaploid Spartina …

Comparative effect of allopolyploidy on transposable element composition and gene expression between Gossypium hirsutum and its two diploid progenitors

H Cheng, G Sun, S He, W Gong, Z Peng… - Journal of integrative …, 2019 - Wiley Online Library
An allopolyploidization event formed allotetraploid Gossypium species from an A‐genome
diploid species and a D‐genome diploid species. To explore the responses of transposable …

Preferential insertion of a Ty1 LTR-retrotransposon into the A sub-genome's HD1 gene significantly correlated with the reduction in stem trichomes of tetraploid cotton

M Tang, X Wu, Y Cao, Y Qin, M Ding, Y Jiang… - Molecular Genetics and …, 2020 - Springer
Stem trichomes and seed fibers originate from epidermal cells and partially share a
regulatory pathway at the molecular level. In Gossypium barbadense, two insertions of a Ty1 …