[HTML][HTML] Natural variation in crops: realized understanding, continuing promise

Y Liang, HJ Liu, J Yan, F Tian - Annual review of plant biology, 2021 - annualreviews.org
Crops feed the world's population and shape human civilization. The improvement of crop
productivity has been ongoing for almost 10,000 years and has evolved from an experience …

[HTML][HTML] Unique roles of rare variants in the genetics of complex diseases in humans

Y Momozawa, K Mizukami - Journal of human genetics, 2021 - nature.com
Genome-wide association studies have identified> 10,000 genetic variants associated with
various phenotypes and diseases. Although the majority are common variants, rare variants …

Common genetic variants contribute to risk of rare severe neurodevelopmental disorders

MEK Niemi, HC Martin, DL Rice, G Gallone, S Gordon… - Nature, 2018 - nature.com
There are thousands of rare human disorders that are caused by single deleterious, protein-
coding genetic variants. However, patients with the same genetic defect can have different …

[HTML][HTML] Extent to which array genotyping and imputation with large reference panels approximate deep whole-genome sequencing

SC Hanks, L Forer, S Schönherr, J LeFaive… - The American Journal of …, 2022 - cell.com
Understanding the genetic basis of human diseases and traits is dependent on the
identification and accurate genotyping of genetic variants. Deep whole-genome sequencing …

[HTML][HTML] The role of mitochondrial DNA mutations in cardiovascular diseases

SA Dabravolski, VA Khotina, VN Sukhorukov… - International Journal of …, 2022 - mdpi.com
Cardiovascular diseases (CVD) are one of the leading causes of morbidity and mortality
worldwide. mtDNA (mitochondrial DNA) mutations are known to participate in the …

Introgression from Gossypium hirsutum is a driver for population divergence and genetic diversity in Gossypium barbadense

P Wang, N Dong, M Wang, G Sun, Y Jia… - The Plant …, 2022 - Wiley Online Library
Significance Statement Interspecific introgression from Gossypium hirsutum has reorganized
the genomic architecture of Gossypium barbadense. In this study, the genetic basis of …

275 years of forestry meets genomics in Pinus sylvestris

T Pyhäjärvi, ST Kujala… - Evolutionary Applications, 2020 - Wiley Online Library
Pinus sylvestris has a long history of basic and applied research that is relevant for both
forestry and evolutionary studies. Its patterns of adaptive variation and role in forest …

Contribution of rare and predicted pathogenic gene variants to childhood-onset lupus: a large, genetic panel analysis of British and French cohorts

A Belot, GI Rice, SO Omarjee, Q Rouchon… - The Lancet …, 2020 - thelancet.com
Background Systemic lupus erythematosus (SLE) is a rare immunological disorder and
genetic factors are considered important in its causation. Monogenic lupus has been …

[HTML][HTML] Identification of putative causal loci in whole-genome sequencing data via knockoff statistics

Z He, L Liu, C Wang, Y Le Guen, J Lee… - Nature …, 2021 - nature.com
The analysis of whole-genome sequencing studies is challenging due to the large number
of rare variants in noncoding regions and the lack of natural units for testing. We propose a …

[HTML][HTML] NRDE2 deficiency impairs homologous recombination repair and sensitizes hepatocellular carcinoma to PARP inhibitors

Y Wang, X Liu, X Zuo, C Wang, Z Zhang, H Zhang… - Cell Genomics, 2024 - cell.com
To identify novel susceptibility genes for hepatocellular carcinoma (HCC), we performed a
rare-variant association study in Chinese populations consisting of 2,750 cases and 4,153 …